Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0883 ATGGAAGGAAATTTGCAACAGGGAGGCATGATTCAAGGTGGGACTTCTTTTGGTGGCTTTGATTTGCCAGGATCAATTCGGGTTCAGCATCAAGCACAGCATCCCCACACCATGCACCAACATCAAACTCATCCGCGTCAAGGGTCTTCTGTGCATTCCGCGGTTCATGATGGGTTTCCACTTACAGTGGAAACCCTGCAGAACTGTGACCAAACCATTTCATTGACAGACTTTAGTAAAGGAGACAGAAGCAAAAACTCAGTGAGTGATGAAGACGAGCCGAGCTTTACTGAGGATGGTGTTGATTGTCACCATGAAGCGAGTAGAGGGAAGAAGGGATCACCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTAAAGCTTCTGATAACAGCTGTTTCTTATATAGGCGAGGATGTAACTgctgatggtggtggcagcggaAGAAGGAAATTTGCAGTATTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGGTTATCTTGTTTCCCCTCAGCAATGCGAGGATAAATTCAATGACCTTAATAAAAGGTATAAAAAGCTTAATGATATGCTAGGGAGGGGCACTTCTTGTCAGGTTGTTGAAAATCCTGCACTGTTGGATGTAATAGATTATCTGACtgagaaagaaaaggatgaTGTTCGGAAAATATTAAGCTCAAAACACTTGTTCTATGAAGAGATGTGTTCTTATCATAATGGTAATAGGTTGCATTTGCCACATGATCCCGCATTGCAACGTTCACTGCAGTTAGCTCTCCGAAATAGAGATGATCATGATAATGATGATATCAAAAGGTCCCATcatgatgatcatgatgaagATGATCAGGATGCGGAAATTGATGATCATGATGACTTTGAAGAGAATTGTGCTTCTCATGGTGATAGTAGACGAATATATGGGTCGTTAGGCGGATCTTTGAAGAAATTGAAACAAGGCCAAGGCCAAGATGATGCTAATACTTTTGGTAATTCTTCAAATTGTCAGGACTACAACAAAAGCTCATTTTCCCATGGACAGATGGTCCAATCTGATGTGAATCAAGGTTTACCTGAAAGCACGAGAGCAGCTTGGTTAGAGAAGCAATGGGTTGAATCTCGCTCACTTCAGTTAGAAGAACAAAAGCTACAAATTCAGGTTGATATGTTGGAACTAGAGAAGCAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGACCGGGAGTTGGAGAAGCTTGAGTCTAGAAAATGA 1275 0.4008 MEGNLQQGGMIQGGTSFGGFDLPGSIRVQHQAQHPHTMHQHQTHPRQGSSVHSAVHDGFPLTVETLQNCDQTISLTDFSKGDRSKNSVSDEDEPSFTEDGVDCHHEASRGKKGSPWQRVKWTDKMVKLLITAVSYIGEDVTADGGGSGRRKFAVLQKKGKWKSVSKVMAERGYLVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDIKRSHHDDHDEDDQDAEIDDHDDFEENCASHGDSRRIYGSLGGSLKKLKQGQGQDDANTFGNSSNCQDYNKSSFSHGQMVQSDVNQGLPESTRAAWLEKQWVESRSLQLEEQKLQIQVDMLELEKQRFKWQRFSKKKDRELEKLESRK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0883 424 Coils Coil 380 402 - -
Ssu7g0883 424 MobiDBLite consensus disorder prediction 271 287 - -
Ssu7g0883 424 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
Ssu7g0883 424 Gene3D - 121 193 - -
Ssu7g0883 424 MobiDBLite consensus disorder prediction 76 114 - -
Ssu7g0883 424 MobiDBLite consensus disorder prediction 271 293 - -
Ssu7g0883 424 MobiDBLite consensus disorder prediction 1 54 - -
Ssu7g0883 424 PANTHER FACTOR, PUTATIVE-RELATED 1 421 - -
Ssu7g0883 424 MobiDBLite consensus disorder prediction 83 114 - -
Ssu7g0883 424 MobiDBLite consensus disorder prediction 30 50 - -
Ssu7g0883 424 PANTHER F16F4.11 PROTEIN-RELATED 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0883 Ssu-Chr7 18246247 18247521 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g0883 Myb_DNA-bind_4 4.9e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0883 - - gmx:100812134 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0883 7 18246247 18247521 Ssu7g0883 7 18246247 18247521 PCT