Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0879 ATGGGAAGGAAGAAGCCAACGGCAAGGGACGACGAGAACGCGTCGCAGCAAGGCGGCGGCGGGAAATCGAAGAAGAAGGCGGTGGTCATCGACGACGACGAGTACTCCATCGGAACGGAGCTCTCCAAGGAGCGCGCGGAGCCGGAGCCGGCGCCGGGGCCGGATGAGAAACCCGCCGTAAAGAAGAAAGGTAAAAAAGGTAATGCTAAAGCTAAGAGTaacgatgatgatgatgatgttgatgatgaggatgTGCCTGAAGTTGTGTTTGCTGGGAAGAAGAAGGGGAAGAATAAGAAAGGTGGTGAGAGCAGTGTGTTGACTGCATCTAGCTTTGGTTTGCTTGGTGATGAGGAAGGTCATGATGAAGAGAAATCTGGGGTAACTGGTGAGGATGAAGAGGATGAACCTGTGGTTAGTTTTTCGGGTAAGAAGAAGCCGTCGAAGAAAGGTGGTGGTAGTTTGTTCACTGCATCTGCTTTTGATGCAATTGATGATGGTGAGGAGGAGGATGAGCCGGTGGTTAGTTTTTCTGGCAAGAAGAAGTCCTCGAAGGGTTCTAAGAATGGCGGGGGTGGCAGTTTGTTCACTGCCTCGGCTTTTGATGCTACTGATGATGATGGGGATGGTGAGGTGGTGGATGATAAGGATGATGGTGTTGATGCTGATGAACCTGTTATTGCTTTCACGGGGAAGAAGAAGTCTTCGAAAGGGAGTAAGAAGGGTGGTGCTGGGTTTTCAGCTGCTATTCTTGATGAGATTGATAATGGAGAGGAGAATAAGGATGGTGGTGGGGATGATGACGATGACATTGGACCGATCACTTTCTCTGGTAAGAAAAAGAAGTCTTCCAAAAAGGCTGTCAATTCTGCGAGCAAAGGTGTTTCAGTTGAGGATGATGTTTCTGTGCCTGAGTCTGGCAAAGGTGGTGATGACAAGGATGAGGATGATGTTTCTTTGGTTGCGTTTTCAGGTAAAAAAAAGTCTTCTAAAAAGAAAGGCGGTAGTACTGCTGCCAAAGGGGGTGATGAATTTGGGTTTGGGAGTGAAAATGTGGATGTAGCTGAGCCTGAGCTACCCAGTGTTGGAATTAGCAGTACTGATGCTGGCAACAGCAATGTAAATAAGAGTGAAGGGGTTGCTGAAACTTccaaaaataagaagaagaataagaagaagagTGGTAGAACTGCTCAAGAGGAGGAAGATTTGGACAAGCTTCTTGCAGAGCTTGGTGAAGCCCCTCCTGTACCAAAACCCACAGCTTCTGCACTGCAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGGTTCTGTTGCTGATGCTTCAGGGGAAAAGGAGGGTGAGGAGGAGACTGTAGAGTCAGCTGctgcaaagaaaaagaagaagaaaaaggaaaaggaaaaggagaagaaggCAGCTGCCGCAGCGGCTGCAGCAGCAGGAAGTGCTCCAGATAATGAAACAGCAGAAGTTAAAGCTGAGACAATTGAATCAAAGAAGAATGAGTCAAAGACTAAAGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCCCTAGCTCGAAGGAAAGAGGctgaagaaaggaagaaaagagaagaggagGAGAAGTTGAGGAAGGAGGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAGgctagaagaagaaagaaggaaagagaaaaggagaaacTCCAGAAGAAAAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAGGAAGAGGCCCGGCGTTTGGAGGCAATGAGGAGACAGATTCTCAATAACACAGGGGGTATGACTCTCCCTTCTGGGGACTCTGGTGCTCCAGCCAAAAAACCCATCTATCAGAAAAAGaagttaaaacaaaatcatCGTAATCAGGATGGTGCTGCTACTGCTCAGACAGCTGAAAGTGTTGAAGCAAAGGAGACTACCGCTGATGTGGCTCCAGAGGAACCAGAAAAGATTGAAGAAGTGGAGTCAATGCAGGTGGATGACAAAGTTGAACTTCCTGTGGCTGTTGAAGAGAATGCAGCagatgatgatgaagaggatgaatgGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCTAAAGGTGCATTTGCTGATGAGGAGGTTGATTCAGAGCCTGAACCTATTGTCAAAAAGGAGATTAAAAGTGCTGTACTTACTCAGGATACTGGTGCTACTAATAAAACTGTTTCTAAGCCTGTGGCTGAAGAAATTGAAAACGGAAAGCAGGCTAATGCTGTGGTTctggacaaaaataaaaagcatgATCCTGACTTGAATAGGGAACCAAGAAAGTCTGCTGTGCTTCCTAAGCCTAATGATGAGAACCTCCGTTCCCCAATTTGCTGTATCATGGGGCATGTAGATACTGGCAAAACGAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGTGGTATCACACAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGTGAAAGAACGAAGGAACTGAAAGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCATGAGTCATTTACTAACTTGAGGTCTCGGGTTCAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATTCTCCAATTGTTAAAGCAATGAAGCAGCAGACTAAGGATgttcaaaatgagtttaatatgaGGCTCACTCAGATTATTACTCAATTCAAAGAACAGGGGCTGAATACTGAGttgtattataaaaacaaagaaatgggAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCCGATTTGTTATTACTATTGGTTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTACAGTGTACTGTTTTAGAGGTGAAGGTAGTTGAAGGCCACGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCACGAAGGAGAACAAATAGTTGTCTGTGGAATGCAGggGCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTCAAGGGAACATTTCTTCACCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATAACTGCCCAGGGGCTTGAACATGCCATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAAGCAGCCATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAGGACCGGTGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGAAGCATTACTGGAATTTTTGAAAACTCCAGAAGTGAGTATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCGAGTGTAATGCTTGAAAAGAAGCGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTTACTCCTGAAGCTAGGGAACTGGCAGATGAATTGGGTGTGAAGATATTTATTGCTGATATCATTTATCATTTGTTTGATCAATTTAAAGCTTATATTGACAACATTAAGgaggagaaaaagagagaagctGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTGCCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAaagATTGGGACTCCAATTTGCATTCCTTCCAAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAGAAAATGTATGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCAATTGATATACTCAAAGCTAATTATCGGGATGATCTATCTATGGAAGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4038 0.4118 MGRKKPTARDDENASQQGGGGKSKKKAVVIDDDEYSIGTELSKERAEPEPAPGPDEKPAVKKKGKKGNAKAKSNDDDDDVDDEDVPEVVFAGKKKGKNKKGGESSVLTASSFGLLGDEEGHDEEKSGVTGEDEEDEPVVSFSGKKKPSKKGGGSLFTASAFDAIDDGEEEDEPVVSFSGKKKSSKGSKNGGGGSLFTASAFDATDDDGDGEVVDDKDDGVDADEPVIAFTGKKKSSKGSKKGGAGFSAAILDEIDNGEENKDGGGDDDDDIGPITFSGKKKKSSKKAVNSASKGVSVEDDVSVPESGKGGDDKDEDDVSLVAFSGKKKSSKKKGGSTAAKGGDEFGFGSENVDVAEPELPSVGISSTDAGNSNVNKSEGVAETSKNKKKNKKKSGRTAQEEEDLDKLLAELGEAPPVPKPTASALQDDKVQPTPEVGSVADASGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSAPDNETAEVKAETIESKKNESKTKAADKKVPKHVREMQEALARRKEAEERKKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGMTLPSGDSGAPAKKPIYQKKKLKQNHRNQDGAATAQTAESVEAKETTADVAPEEPEKIEEVESMQVDDKVELPVAVEENAADDDEEDEWDAKSWDDVNLNAKGAFADEEVDSEPEPIVKKEIKSAVLTQDTGATNKTVSKPVAEEIENGKQANAVVLDKNKKHDPDLNREPRKSAVLPKPNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRVQVDRLYGWKTCRNSPIVKAMKQQTKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTFLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEAAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSKEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMYGRHFEIDDELVSHISRRSIDILKANYRDDLSMEEWRLVVKLKNLFKIQ 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0879 1345 Gene3D - 879 975 IPR027417 -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 304 322 - -
Ssu7g0879 1345 Coils Coil 446 478 - -
Ssu7g0879 1345 Gene3D Translation factors 976 1096 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 741 788 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 25 62 - -
Ssu7g0879 1345 Pfam Elongation factor Tu domain 2 992 1067 IPR004161 GO:0005525
Ssu7g0879 1345 CDD IF2_eIF5B 796 966 - -
Ssu7g0879 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 1044 IPR027417 -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 442 461 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 394 409 - -
Ssu7g0879 1345 Coils Coil 513 584 - -
Ssu7g0879 1345 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 877 IPR015760 -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 491 598 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 764 787 - -
Ssu7g0879 1345 Gene3D - 1097 1201 IPR036925 -
Ssu7g0879 1345 CDD aeIF5B_II 977 1087 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 364 380 - -
Ssu7g0879 1345 CDD IF2_aeIF5B_IV 1216 1311 - -
Ssu7g0879 1345 Coils Coil 487 507 - -
Ssu7g0879 1345 Gene3D Translation factors 1208 1345 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 1 680 - -
Ssu7g0879 1345 PANTHER PHOTOSYSTEM II PROTEIN D1 879 1345 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 86 101 - -
Ssu7g0879 1345 PANTHER PHOTOSYSTEM II PROTEIN D1 1 877 - -
Ssu7g0879 1345 Pfam Translation-initiation factor 2 1081 1194 IPR023115 -
Ssu7g0879 1345 Pfam Elongation factor Tu GTP binding domain 797 877 IPR000795 GO:0003924|GO:0005525
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 180 194 - -
Ssu7g0879 1345 Gene3D - 787 878 IPR027417 -
Ssu7g0879 1345 SUPERFAMILY Translation proteins 1212 1344 IPR009000 -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 204 221 - -
Ssu7g0879 1345 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1078 1207 IPR036925 -
Ssu7g0879 1345 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 879 1345 IPR015760 -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 636 651 - -
Ssu7g0879 1345 MobiDBLite consensus disorder prediction 654 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0879 Ssu-Chr7 18172477 18182992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0879 1 41 Eukaryotic Initiation Factors Gene Family AT1G76810 65.217 8.51e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0879 K03243 - gmx:100814875 1779.99