Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0878 ATGGAACCGAAATTCACCGGAGCTCCGCCGGTTACGGCGGAGTTTGATGAGATACTGGCGGAACCAGAGAACTGGTCCCACCACCGGAGGGCCTTCTCCGAGAACTACTTCCCCGTCGCCGACACCTTCGACGATCTGCTCAACTTCGACTTCGACTCCGATCCTTTTGATTTCGACATGCCCAACTTCccaccgccgccgccgccgccgccaacCGCCGCCTTAGTGCAGGTCGATTCGATTTCCTCAGAGGAATCCAACGCGCGGGCCTCGAGGCCCGGCCCGGTAGGGTCCACTGTGGGACTCGACCGTGGCAAGTGCGTGGTCGTGGATAACCTCTGCGGCATCGGAATGGCCGGCGGCGGAGCATACGGCGGCGCTAAGGGTGGCGGAGAGGATAACGTGGAGCGGCGCCACCGGCACAGCATTTCCGTTGACGAGTCCACGACGACGACGACGTCGTTTGGGGGCGAGCCGGCTTCTTTGGTGAAAAGGGCAATGACCACTGAGCAGCTCGCTGAACTTGCTAGGGTTGATCCCAAGAGGGTTAAGAGGATTCTTGCCAATAGGCAATCTGCTGCTAAATCAAAGGAGAGGAAAACGCGTTATGCAAGAGAGTTGCAAAAGAGGGTCCAGCTGCTTAAAATTAAAGCAACCAACCTATCTACTGATGTTGGCATGCTTCAGAGAGAGACTGTAGAGATGGCTGTTCGGAACAAGGAGCTCAGAATACGCGTAGAGGCTGAGCGACAACAATCAAAAATTAGACATGCTCTCAGCGCGGCGTTAAAGGAAGAAGTTCGGAGCCTTAGGAATGAAACTGATCATCTTGCTACTATATTGAGTACTCCTTCTCTTTGCTGGTACGCTCTCTCAGTGCTCTTCCCAGTTAGCTCTGCAGCAGTTTCATAA 912 0.5263 MEPKFTGAPPVTAEFDEILAEPENWSHHRRAFSENYFPVADTFDDLLNFDFDSDPFDFDMPNFPPPPPPPPTAALVQVDSISSEESNARASRPGPVGSTVGLDRGKCVVVDNLCGIGMAGGGAYGGAKGGGEDNVERRHRHSISVDESTTTTTSFGGEPASLVKRAMTTEQLAELARVDPKRVKRILANRQSAAKSKERKTRYARELQKRVQLLKIKATNLSTDVGMLQRETVEMAVRNKELRIRVEAERQQSKIRHALSAALKEEVRSLRNETDHLATILSTPSLCWYALSVLFPVSSAAVS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0878 303 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 242 IPR004827 GO:0003700|GO:0006355
Ssu7g0878 303 SUPERFAMILY Leucine zipper domain 181 235 IPR046347 GO:0003700|GO:0006355
Ssu7g0878 303 Coils Coil 204 224 - -
Ssu7g0878 303 MobiDBLite consensus disorder prediction 79 93 - -
Ssu7g0878 303 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 14 280 - -
Ssu7g0878 303 SMART brlzneu 177 241 IPR004827 GO:0003700|GO:0006355
Ssu7g0878 303 Pfam Basic region leucine zipper 179 231 IPR004827 GO:0003700|GO:0006355
Ssu7g0878 303 CDD bZIP_plant_RF2 182 231 IPR044759 GO:0003700|GO:0006355
Ssu7g0878 303 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 14 280 - -
Ssu7g0878 303 MobiDBLite consensus disorder prediction 79 101 - -
Ssu7g0878 303 Gene3D - 180 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0878 Ssu-Chr7 18111247 18116707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0878 125 271 bZIP Transcription Factor Family AT2G40620 48.299 3.55e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu7g0878 bZIP_2 6.8e-05 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0878 K20557 - gmx:778142 174.481