Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0871 ATGAGGGATATTGCAAATGAGTTTGAGCCTTGCTCGAAGCTTGAGGACCTAAATTTGGATGTTAGAAAGAACTCCAAGGAGACAGAGGAAAAATTTCTCACTAACAGTTTTTTCCAGAGGCACGAACATTCAAGTGTCCCAGttcatgaaataatattttccaCTGTTGACAAGCCAAAGCTGTTAAGCCAGctGTCCGCTTTGCTGTCTGATATTGGACTTAACATCCGTGAAGCACATGTTTTCTCCACAACTGACGGCTATTCCCTCGACGTGTTTGTGGTGGATGGATGGCCAGTAGAGGAAACAGATGATTTGTATGATGCTATGGAAAAAGCTGTAGCAAGAAGTGAGGGATCATGGTCTCGTTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAACAGAAGGAAAACCAGGAGATTGGGAAATAGACAGGAGGTTGCTAAAGTTAGGAGAAAAAATAGCGTCTGGATCCTCTGGAGATTTGTATTGTGGAGTTTATCTTGGTGAAAATGTTGCTGTTAAGGTTCTCAGATCTGAGCAATTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACGAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACGTGCACAAAAATCATAATGTCTTGGATCTGTctcaattactaaaatttgcAATTGATGTCTGCAAAGGCATGGAGTATTTGCATGGAAACAGTATAATTCACAGAGATCTGAAGACAGCTAATTTGCTGATGGATATACACAAtGTTGTTAAAGTTGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCACCAGAGGTTATAAACCATCAGCCCTATGATCAGAAGGCAGATGTATTCAGTTTTTCCATTGTGCTGTGGGAATTAGTGACCGCAAAGGTACCATATGACACGATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGTTTGCTCTTTATCAATTAGATTTGAATGTTCAAGCATAATGTTTAATACATAA 1134 0.4004 MRDIANEFEPCSKLEDLNLDVRKNSKETEEKFLTNSFFQRHEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDDLYDAMEKAVARSEGSWSRSSNSHSAVEKALATEGKPGDWEIDRRLLKLGEKIASGSSGDLYCGVYLGENVAVKVLRSEQLNDALEDEFAQEVAILRQVHHKNVVRFIGACTKCPHLCIVTEYMPGGSLYDYVHKNHNVLDLSQLLKFAIDVCKGMEYLHGNSIIHRDLKTANLLMDIHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQVCSLSIRFECSSIMFNT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0871 377 Gene3D Transferase(Phosphotransferase) domain 1 229 374 - -
Ssu7g0871 377 PRINTS Tyrosine kinase catalytic domain signature 262 280 IPR001245 GO:0004672|GO:0006468
Ssu7g0871 377 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Ssu7g0871 377 PRINTS Tyrosine kinase catalytic domain signature 225 238 IPR001245 GO:0004672|GO:0006468
Ssu7g0871 377 PRINTS Tyrosine kinase catalytic domain signature 308 318 IPR001245 GO:0004672|GO:0006468
Ssu7g0871 377 Pfam Protein tyrosine and serine/threonine kinase 151 372 IPR001245 GO:0004672|GO:0006468
Ssu7g0871 377 SMART serkin_6 151 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0871 377 ProSiteProfiles Protein kinase domain profile. 151 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0871 377 Gene3D Phosphorylase Kinase; domain 1 141 228 - -
Ssu7g0871 377 ProSiteProfiles ACT domain profile. 50 124 IPR002912 -
Ssu7g0871 377 CDD STKc_MAP3K-like 157 360 - -
Ssu7g0871 377 SUPERFAMILY Protein kinase-like (PK-like) 137 373 IPR011009 -
Ssu7g0871 377 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 5 360 - -
Ssu7g0871 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Ssu7g0871 377 SUPERFAMILY ACT-like 49 118 IPR045865 -
Ssu7g0871 377 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0871 Ssu-Chr7 17941607 17952754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0871 35 360 MAP Kinase Kinase Kinase AT4G38470 63.798 2.62e-147 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu7g0871 PK_Tyr_Ser-Thr 5.5e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0871 - - gmx:100797987 688.723