Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0859 ATGAAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAGGAGAAAGAAGAGGGATTAGACTCTTCTGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGACAGTTATTCTGTTTGGGGCGTGCTCTTCTAAGGAGAAGTAGGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTTTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACGGTGATCACAGTAGCGCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATCAGTGATGGAAAACTGGTGGAGTATGATGAGCCAATGAACTTGATAAAGAGAGAAGGATCACTGTTTGGGAAACTTGTCAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTAG 423 0.435 MKVLGKCQLQEAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLIKREGSLFGKLVKEYWSHFQSAESH 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0859 140 Gene3D - 1 139 IPR027417 -
Ssu7g0859 140 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 140 - -
Ssu7g0859 140 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 3 140 - -
Ssu7g0859 140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 121 IPR027417 -
Ssu7g0859 140 Pfam ABC transporter 20 59 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0859 Ssu-Chr7 17637225 17707108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0859 18 135 Calmodulin-binding Proteins AT2G36910 30.833 4.25e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0859 K05666 - gmx:100811468 275.404