Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0845 ATGGAACAGAAACGCGTGTTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGACTTGGATTGAGCACAGGACAGGCTGTTCAAAAATGGGTTGGAGGGAATTGTGAGTCTGAGGAGCAACTTGTGTTGGAGCTCAACAACAAAGTGATTGATGGGAAGAACATCGAAACCACATTTGATGAGTTTCCTTATTACTTAAGTGAAAAAATCCGAATTTTGTTGACTAGTGCTggatatgtttatttaaaacaagACTTTTCCAAGTACATGAAGAACCTTTCTCCAGCAAGCAGAGCTATTTTGCTTTCTGGACCTGCAGAACTTTATCACCAAAAGCTTGCCCGAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTGCTAGACGTTACTGACTTCTCGTTGCAGATGCAGAAGAAATATGGAAGTCCCAGAAAAGAACCACATTTTAAAAGGTCCATATCCGAGGTGACTTTGGAGCGAGTGTCTGGTTTGTTTGGCTCCTTGTCAGTCCTTCCTTCAACAAGCAGAACTAGAGGTACCCTATGTCGACAGAGTAGTGGAATTGAAAATCCCAGCAATCCTCGGAAGCTTCGTAGGAATGCCTCTACTGCATCTGCATGTGACACAAATAGCACTTCCCAATATAGTCCATCAGATCCAGGTCCTTTGAAGTGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTTGTGCAGGCACTTTATAAGGTCTTGGTTTCTGTCTCAGAAACCGAttcctttattttatacatCAAGGATGCTGAGAAGCTCTTTGTTCGATCACCAAGGTTACACAATTTGTTCCAAAAGCTAATAAAGAAACTGTCAGGATCAGTGTTAATACTCGGTTCCCAGATCTTTGACTCTGAAGATGATTGTACAGAAGTTGATGAAAAGCTTACTATGTTATTCCCCTACAACATTGAGATCAAACCACCTCAAGATGAGACCAATCTTGCAAGCTGGAAAACCAAACTGAAAGACGAGGACATGAATAAAATTCGGTTTCGAGATAGCCGAAACCACCTTGCTGAAGTACTTGCAGCAAATAACATTGATTGTGATGACTTGGATTCAATCTGCCATGCCGACACTATGTTACTCAGTAATTGCATTGAAGAGATTGTGGCGTCTGCAATTTCTTACTACTTGATGGAGAACAAAATTCCAGAATACAGAAATGGAAAGCTAGTTATATCAGCTAAGAGTTTGTCCCATGTATTGAGTCTGTTCCAGGAGAGTGAAAGTAGTCTGGAGACTAAAGATTCAAACAAGGAAGTTCCTCCTGACAATGAGTTTGAGAAGCGCATGAGAGCAGAGCTTGTGCCTGCAAATGAGATAGGGGTTACATTTTCAGATATTGGTGCATTGAATGATATTAAAGAATTACTACAAGATGTGGTCATGCTTCCCCTCAGAAGACCAGACTTATTCAAAGGTGGGCTTCTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCATCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATGTCTGCCATCACCTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCGCTAGCAGCAAAGGTTGCtccaactattatttttattgatgagGTTGATAGCATGCTTGGGCAGCGGACTAAATGTGGAGAGCATGAGGCAatgagaaagattaaaaatgaattcatgGCCCACTGGGATGGGCTATTGTCAAAACCTGGTGAGCGAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGTAG 1875 0.4053 MEQKRVLLSALSVGVGLGVGLGLSTGQAVQKWVGGNCESEEQLVLELNNKVIDGKNIETTFDEFPYYLSEKIRILLTSAGYVYLKQDFSKYMKNLSPASRAILLSGPAELYHQKLARALAHYFESKLLLLDVTDFSLQMQKKYGSPRKEPHFKRSISEVTLERVSGLFGSLSVLPSTSRTRGTLCRQSSGIENPSNPRKLRRNASTASACDTNSTSQYSPSDPGPLKCTSGFCFDEKLFVQALYKVLVSVSETDSFILYIKDAEKLFVRSPRLHNLFQKLIKKLSGSVLILGSQIFDSEDDCTEVDEKLTMLFPYNIEIKPPQDETNLASWKTKLKDEDMNKIRFRDSRNHLAEVLAANNIDCDDLDSICHADTMLLSNCIEEIVASAISYYLMENKIPEYRNGKLVISAKSLSHVLSLFQESESSLETKDSNKEVPPDNEFEKRMRAELVPANEIGVTFSDIGALNDIKELLQDVVMLPLRRPDLFKGGLLKPYKGILLFGHPGTGKTMLAKAIANEAGASFINVSMSAITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTKCGEHEAMRKIKNEFMAHWDGLLSKPGERILVLAATNRPFDLDEAIIRRFERR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0845 624 Pfam ATPase family associated with various cellular activities (AAA) 498 624 IPR003959 GO:0005524|GO:0016887
Ssu7g0845 624 ProSitePatterns AAA-protein family signature. 601 620 IPR003960 GO:0005524|GO:0016887
Ssu7g0845 624 Gene3D - 457 624 IPR027417 -
Ssu7g0845 624 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 433 624 - -
Ssu7g0845 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 621 IPR027417 -
Ssu7g0845 624 MobiDBLite consensus disorder prediction 179 224 - -
Ssu7g0845 624 CDD AAA 492 624 - -
Ssu7g0845 624 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 433 624 - -
Ssu7g0845 624 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 428 - -
Ssu7g0845 624 SMART AAA_5 494 623 IPR003593 -
Ssu7g0845 624 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0845 Ssu-Chr7 16986111 16991870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0845 458 623 Calmodulin-binding Proteins AT3G56690 40.237 7.52e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0845 - - gmx:100793760 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0845 7 16986111 16991870 Ssu7g0845 7 16986111 16991870 PCT