Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0841 ATGCTGCAACCGCGGGTTCACACAACCAGTAAAAAATCTGGAGTTAACTTCATTCCCTCCATTAATACGTCTCCTTCACCGCCCACCCCCTCCCAGATCCTTGCCGTTGTGGGCCCCAGCGGCGCCGGCAAGTCCACCCTCCTCGACATCCTCTCCGCCCGCACCCTCCCCTCCCGCGGCACCCTCTCCCTCAACTCCTCCCCTCTCGTCCCCTCCACCTTCCGCAAGCTCTCCGCCTACGTCCCCCAGCACGACCACTGCCTCCCTCTCCTCACCGTCTCCGAGACCTTCTTCTTCGCCGCCACGCTCCTCAGGCCCAAAACCCCCAGCACCGCCTCCATCGTCTCCTCCCTCCTCGCCGAGCTCAGGCTCACTCATCTAGCCAACACGAGGCTCGCGCACGGCCTCTCCGGCGGAGAGCGCAGAAGGGTCTCCATCGGCCTCAGCCTCCTCCATGATCCCGCGGTGCTCCTCCTCGACGAACCCACCTCGGGGCTTGACAGCACGTCCGCCTTCAAAGTCATGCAGATTCTGAAACAGGCTTGCGTGTCCCGCAACAGGACTATCGTGCTCTCCATCCACCAACCTAGCTTCAAGATCCTCTCCTGCATCGATAGGATCCTGCTGCTTTCCAAAGGGACCGTCGTTCACCACGGAAGTGTTGCCACGTTACAAGCGTTCTTGCACTCGAACGGATTCACCCTCCCTCATCAACTCAATGCGTTGGAGTACGCCATGGAGATATTGGGCCAGTTGAATCCGCCGAGTCTTCCTGAATCGCCTGAAAGTTCGAGTTCAGGTTCAAGTTCAACGAGTTATTCCAGTGTTTGTGATAGTGGAAGGACTAGAACTAGGGCTGGCAGTGGAGACAACCAGGCAACTGCTTTGACCAACACTGCGGAAGCGCTTCTCGTGGGTCTTGTGTTGGGAACTATTTATATCAACATAGGGTTTGATAAGCAAGGGATCGAGAAGAGGTTCGGTCTCTTTGCCTTCACTCTCACGTTTCTCCTGTCTTCTACGACCGAGACACTCCCCATCTTCATCAACGAGAGGCCAATCTTGCTGAGGGAAACCTCGAGTGGGGTTTATAGGCTTTCGTCTTATCTCGTCGCAAACACGCTTGTTTTCTTGCCCTACTTGTTCGTGGTTGCTGTTTTATACTCTATCCCGGTTTACTTCTTAGTGGGTCTCTGTGCTTCCTGGCTCTCCTTCGCTTATTTTGTCTTGGTCATTTGGGTCATTGTTCTCATGGCAAACTCGTTCGTTCTCTTTTTGAGCTCTCTCGCGCCGAACTACATCGCTGGGACTTCGCTCTTGACGGTGCTTCTCGCAGCGTTTTTTCTCTTCTCGGGATATTTTATCTCCAGGGATAGCTTGCCCAAGTACTGGCTCTTCATGCACTTCTTCTCTATGTATAAATACGCTCTCGATGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGACAAGGTGTTTGATATGGTACCAGGAGAATGAACAGTGCATGGTCACCGGTGGCGACGTGCTGCAGAAGAGAGGGCTCAGGGAGAGTGAAAGGTGGACCAACGTGTACTTCTTGATCGGGTTCTTTGTGCTGTATCGTGTGCTTTGCTTCTTGGTTTTGATTAGGAGGGTCTCGAGATCCAAAACTTGA 1656 0.5393 MLQPRVHTTSKKSGVNFIPSINTSPSPPTPSQILAVVGPSGAGKSTLLDILSARTLPSRGTLSLNSSPLVPSTFRKLSAYVPQHDHCLPLLTVSETFFFAATLLRPKTPSTASIVSSLLAELRLTHLANTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQACVSRNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSVATLQAFLHSNGFTLPHQLNALEYAMEILGQLNPPSLPESPESSSSGSSSTSYSSVCDSGRTRTRAGSGDNQATALTNTAEALLVGLVLGTIYINIGFDKQGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLVANTLVFLPYLFVVAVLYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISRDSLPKYWLFMHFFSMYKYALDALLINEYSCLVTRCLIWYQENEQCMVTGGDVLQKRGLRESERWTNVYFLIGFFVLYRVLCFLVLIRRVSRSKT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0841 551 Gene3D - 29 237 IPR027417 -
Ssu7g0841 551 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 4 237 IPR003439 GO:0005524
Ssu7g0841 551 MobiDBLite consensus disorder prediction 256 291 - -
Ssu7g0841 551 Pfam ABC-2 type transporter 290 485 IPR013525 GO:0016020|GO:0140359
Ssu7g0841 551 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 29 546 - -
Ssu7g0841 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 228 IPR027417 -
Ssu7g0841 551 MobiDBLite consensus disorder prediction 255 291 - -
Ssu7g0841 551 Pfam ABC transporter 30 164 IPR003439 GO:0005524
Ssu7g0841 551 SMART AAA_5 30 214 IPR003593 -
Ssu7g0841 551 Pfam ABC-2 type transporter 194 253 IPR043926 GO:0140359
Ssu7g0841 551 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 546 - -
Ssu7g0841 551 MobiDBLite consensus disorder prediction 1 29 - -
Ssu7g0841 551 ProSitePatterns ABC transporters family signature. 136 150 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0841 Ssu-Chr7 16897357 16900819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0841 32 220 Calmodulin-binding Proteins AT2G36910 30.303 1.50e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0841 K05681 - gmx:100790712 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0841 7 16897357 16900819 Ssu7g0841 7 16897357 16900819 ECH