Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0832 ATGGCTGAGGACTGGGATCTCTTTGCCATCGTGCGAAGCTGCCAATCAGCCACCAATACTGCCACCACAGCAATTCCACAAACCACCACCAACACTTCCTCTTCCTCGGTCACTTCCACTGTCaaggaagaaaaatatgatGCATTTTCTTTTCCCAATATAGTGCAGCCTATAACCAATGAGTTTCAAGAGCTACACCAATTGTTCACACCCTTTAACCCCACTACCACCAACACCACTACCCCTAGTGCTCTTGGCATCAATCCCAATTACCCTGATTTTGCAGAACAGGAAAGGCAGCAACATCTTCCTGCCCTTCCTGCTCCTACTCACACCTCTATTTGGCCTCATTTTGTGCCACAACCCTCCACTCTTAGATTCCACGaccaacaacaacagcaacagcaGAATCAACTACAGGCAGTTCAGAAACAGGAATTTCAAGTACCCCAGAACAATTCTCCTGTAGCTTCGCCAAATACACAACCTCAAACCCCCAAATCAAGAAAAAGAAAAAACCAACAGAAGAAAATGGTGTGCCATGTAACAGCAGATAACCTCTCAGCAGATTTGTGGGCGTGGCGGAAATACGGACAAAAACCAATTAAGGGATCTCCATATCCAAGGAACTACTATAGGTGCAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAAAGGAGTAACACCGAAACCGACATGTTCATCGTTACGTACACCGGAGACCACACGCATCCCCTGCCAACACACCGGAACTCGCTCGCCGGAAGCACCCGGAGTAAGAATCCGACGACGAATCCACCGCCGTCACCTAAGTCACTCTCCTTCGAAGCGAgccccttttcttcttcttcttcgccACCGCACTCTCCGACAACGCCGTCGGAAGAGCCGCCGGAAACCGGCGAGGTAGAACCCGACCCGGAAACGGAAACCGACGTGGAAGATAACGGTGACATTCGGTAA 969 0.4654 MAEDWDLFAIVRSCQSATNTATTAIPQTTTNTSSSSVTSTVKEEKYDAFSFPNIVQPITNEFQELHQLFTPFNPTTTNTTTPSALGINPNYPDFAEQERQQHLPALPAPTHTSIWPHFVPQPSTLRFHDQQQQQQQNQLQAVQKQEFQVPQNNSPVASPNTQPQTPKSRKRKNQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTETDMFIVTYTGDHTHPLPTHRNSLAGSTRSKNPTTNPPPSPKSLSFEASPFSSSSSPPHSPTTPSEEPPETGEVEPDPETETDVEDNGDIR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0832 322 MobiDBLite consensus disorder prediction 240 322 - -
Ssu7g0832 322 Gene3D WRKY domain 171 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu7g0832 322 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 308 - -
Ssu7g0832 322 MobiDBLite consensus disorder prediction 126 168 - -
Ssu7g0832 322 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g0832 322 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g0832 322 MobiDBLite consensus disorder prediction 126 178 - -
Ssu7g0832 322 MobiDBLite consensus disorder prediction 276 291 - -
Ssu7g0832 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 308 IPR044810 GO:0003700
Ssu7g0832 322 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g0832 322 MobiDBLite consensus disorder prediction 246 264 - -
Ssu7g0832 322 MobiDBLite consensus disorder prediction 301 315 - -
Ssu7g0832 322 Coils Coil 125 145 - -
Ssu7g0832 322 SUPERFAMILY WRKY DNA-binding domain 183 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0832 Ssu-Chr7 16675560 16676908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0832 167 310 WRKY Transcription Factor Family AT5G52830 64.384 3.80e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu7g0832 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0832 K13425 - aprc:113871802 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2850 4 72929861 72930229 Ssu7g0832 7 16675560 16676908 ECH
Ssu3g0676 3 16193524 16195071 Ssu7g0832 7 16675560 16676908 ECH
Ssu7g0832 7 16675560 16676908 Ssu7g0832 7 16675560 16676908 ECH
Ssu7g0832 7 16675560 16676908 Ssu7g0832 7 16675560 16676908 PCT