Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0826 ATGGTGTCAAAAAATCCGAACCCCTCTGAGGCTTTCTACTTGGACCCCTCCGGCATGTCGCTCCCCGGCATCCTCCCCTTCGCCGCCGCATCCGCCGCCGCCGATTCCCTTGAGGACCCCGCTAAGAAGACTCGCAAGCCTTACACTATCACCAAGTCTAGGGAGAGTTGGACCGAACCCGAGCACGACAAGTTTCTCGAAGCTCTTCAATTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATACGTAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCcagaccaaaaagaaaagctGCTCATCCATATCCTCAGAAAGCTTCAAAAAATGCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTACATCGGCTTTGCTTGAACCTGGGTACATAATAAAGCATGATTCTTCAGCAATGCTTAAAACTCCTATTATTAACACTGCAGTGTCTTCCTGGTCAAACAACTCTCTGCAGAAAACCACCAATGTATTGCATGGGCAAAAAGGGAATAATTGTTGCAGTAGCAGTGAAAGTCCTAGAGCCCAGTTGGTTGGTGAATCTAATGGTCAAGGGAATAATAGCCATCCATTGAGAGTTCTTCCGGATTTTGCTGAAGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATCTACAGAAACTAAAAAGGATGGATCCTTTAGATGTTGAGACGGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGGAAGCCCAGATTTTGAGGACCATAGAAGGCTGCTTGCATCATATGAGGTGGAGCCTGAGACAGATGACTACATCAATACAGATCGGACCATGCTTGATGTGCAGTTGAAGAGTGCTAGTTAG 933 0.4416 MVSKNPNPSEAFYLDPSGMSLPGILPFAAASAAADSLEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSFQSTSALLEPGYIIKHDSSAMLKTPIINTAVSSWSNNSLQKTTNVLHGQKGNNCCSSSESPRAQLVGESNGQGNNSHPLRVLPDFAEVYSFIGSVFDPNVTGHLQKLKRMDPLDVETVLLLMRNLSINLGSPDFEDHRRLLASYEVEPETDDYINTDRTMLDVQLKSAS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0826 310 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Ssu7g0826 310 Gene3D - 57 104 - -
Ssu7g0826 310 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Ssu7g0826 310 MobiDBLite consensus disorder prediction 104 136 - -
Ssu7g0826 310 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Ssu7g0826 310 PANTHER PROTEIN REVEILLE 6 3 301 - -
Ssu7g0826 310 SMART sant 53 101 IPR001005 -
Ssu7g0826 310 PANTHER SWI/SNF COMPLEX-RELATED 3 301 - -
Ssu7g0826 310 CDD SANT 56 99 IPR001005 -
Ssu7g0826 310 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Ssu7g0826 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Ssu7g0826 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0826 Ssu-Chr7 16575023 16579894 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu7g0826 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0826 - - gmx:100794389 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0826 7 16575023 16579894 Ssu7g0826 7 16575023 16579894 ECH