Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0808 ATGAGGAAGTTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAAGTAAATTTTTTGGAATGGAAGAGGGAAGGGGGTCATAGAGAAAACCTGATTTTGCAACGCTACCATATTACTGGACGGGACGATTACAAAAAATATTCAAGTTTATGTCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCTTTTCGGATTGATATGACTGATAAGCTTTTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATAACACTATGCGAACGCTTAACTGTGTCATCCTTCTGTagGCGTAGGCTCTCTACTGCTTTGGTGCGATTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACTCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATGGGTGGATTCAtccaaaataaagagaaaggtGCTTCAGTACAATGACAAATTGGATGACTATGATTTAATGAATTAA 549 0.3679 MRKLKFHEKKLLKKVNFLEWKREGGHRENLILQRYHITGRDDYKKYSSLCHMVQKLVNILKQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTALVRLKFAEHLKEAVTYIEQGHIRVGPETVTDSAFLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDLMN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0808 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Ssu7g0808 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Ssu7g0808 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 181 IPR022801 -
Ssu7g0808 182 SMART s4_6 107 170 IPR002942 GO:0003723
Ssu7g0808 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Ssu7g0808 182 CDD S4 107 175 - -
Ssu7g0808 182 Gene3D - 107 182 IPR036986 GO:0003723
Ssu7g0808 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
Ssu7g0808 182 SUPERFAMILY Alpha-L RNA-binding motif 26 175 - -
Ssu7g0808 182 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0808 Ssu-Chr7 16196956 16199348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0808 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 2.39e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0808 K14560 - gmx:100798516 357.451