Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0802 ATGCCAGTTGCAAAACTCACGGCCTCTGGCACTCCCAATTTCACAAAAGCAGATGATGGAAATGATTCTTTAGATACAGTAATCAGACAAGCAATTGGAAGAGaacctttcctttcctttcctagGGCCGGTGACAGTCCAGTACAGTGGATTCAGTTACTTCATGATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGTAACAAGTGTTCTCAAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTACAGCATCGGTTGAAAAAGCTCGATAAGGATTCTAAAAACAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGCGTCATTCAAGAATGTGATGCTGGAGACGGATAAGAAACAGCGCTACAAATACAATGACACAGTAGTCTCTTTTGGTTGTCTTCTTTTCAGCTTATTGTGTTccaattttcccttttttccctCAATTAATCAAAgtatcttttattcttgtttctTCCCCATTGAAAATGCTTCCCAGGAAGTTCCAGGATCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGGATCCTAGATGATTCTagtgaaaaaacatttttgggTGGATCAGCTGCGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCCAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAGGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGctggtggaggaggaggaagcTGCTCAGAAAAGaaaagctGAGATTTTAGAGAGGAAGCGCCAGAAAAAACTTAGACAGAAAGAACATAAGGCAAGGGAACAACTTGAAGATGACTCAGAAATTAAAGGGAACATAAGCAGCACAGGAGAGGATGTATGGCCAGCAGAAGCATCTTTGGATATATGTGACTTTGAAGCACATAATTCAGATATATTTGCGGATCATTCTCCTCCACCACATGTAACTTCTCACTTCATAGACACTAACGAAGTTATAGAAGGGGATACACTGTCAGGGTATGATTGTGACACTGATCAGTATATAGAGCGACAGACATCACGAGGACATAATTGCCGGCGCACAATGGCTGCCAGATGGCAAGGGCTGCCAAAATCACAATGGGCTAGAGCCAATGGTTCACATGCGGGCCAGAATTCTCAAATATCAAAGCAcggagtttttcaaaaacatggAACCAACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTAGTAAGATTTGGAGCCGAAAACCTAAACCAGAAACTAATGGGGTGGTTTTAAAAGCCAAACTGCAGAAAGAACCAGACAAAGGCAAGAATCATGAAGTTTTGATAGGATCTGTATCTGTTAGTCTGGGTAATTGCAGCCATTCAGAAGGTAATTTTGTGGCACCCCAGCGGGACTGCTTGGTAGAGAATCTGACCAAGCAGAATACTGCTCAGGAGAAGCTGGTGAAACTCGATTCCTCTAAGGGAGGCAACGGTCGGTTAACAATTAAGCTTTGGAGGCCGGTCAGCCAGCATGGAACCAAAGATCCATTGTCACTTCAAAATGGTGGGACTGAAGCTGATGTAATTAATGGAAAATATGACCAAAATTTGTCAGGTCAAAGTAGTTTAAGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTGGGAACAATTTTTCCCACACTGAGGCTAAAGTAAATTCAGAAAGCTTACGTCTATCCAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAATTGGTTGTTACACCTGGTTTTGAGCCTCTTGGAGGCCAGCAGGTACAGGATTGTGAACTAGCAGCATGTCAATCTTCTAATGCGGACAGATGTAGCATTCTTGCAAATGCAGAGAACCGATTGCCTGCAATCATCGGAGTTGCTAAATCCAAACTCAAAACGAAGTCTGAGAAGGGAACGAAGATAAAGTACATTCCTAAACAAAAAACAGCAACTTAA 2214 0.3961 MPVAKLTASGTPNFTKADDGNDSLDTVIRQAIGREPFLSFPRAGDSPVQWIQLLHDALDQQELPGWPLLSPVKVQLQKCNKCSQEFCSPINYRRHIRVQHRLKKLDKDSKNNRDLLGAYWDKLSVEEAKEVASFKNVMLETDKKQRYKYNDTVVSFGCLLFSLLCSNFPFFPSINQSIFYSCFFPIENASQEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFRILDDSSEKTFLGGSAASMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKAREQLEDDSEIKGNISSTGEDVWPAEASLDICDFEAHNSDIFADHSPPPHVTSHFIDTNEVIEGDTLSGYDCDTDQYIERQTSRGHNCRRTMAARWQGLPKSQWARANGSHAGQNSQISKHGVFQKHGTNRDQRAAPIVNGSKIWSRKPKPETNGVVLKAKLQKEPDKGKNHEVLIGSVSVSLGNCSHSEGNFVAPQRDCLVENLTKQNTAQEKLVKLDSSKGGNGRLTIKLWRPVSQHGTKDPLSLQNGGTEADVINGKYDQNLSGQSSLRLCSIDGSDIGFGNNFSHTEAKVNSESLRLSSHAAKAFLAQRWKEAISSNHVKLVVTPGFEPLGGQQVQDCELAACQSSNADRCSILANAENRLPAIIGVAKSKLKTKSEKGTKIKYIPKQKTAT 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0802 737 MobiDBLite consensus disorder prediction 1 20 - -
Ssu7g0802 737 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 140 - -
Ssu7g0802 737 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 190 736 - -
Ssu7g0802 737 MobiDBLite consensus disorder prediction 339 355 - -
Ssu7g0802 737 MobiDBLite consensus disorder prediction 332 359 - -
Ssu7g0802 737 Coils Coil 324 349 - -
Ssu7g0802 737 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
Ssu7g0802 737 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 105 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0802 19 734 C2H2 Transcription Factor Family AT4G25610 40.499 6.07e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g0802 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0802 - - gmx:100799153 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0802 7 16139815 16145187 Ssu7g0802 7 16139815 16145187 ECH
Ssu7g0802 7 16139815 16145187 Ssu7g0802 7 16139815 16145187 PCT