Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0801 ATGAAGAATCAGCGAGATGAAATACTTCGTGAATTGCAAATGGTCCAAGATCAAAATTCAGCacttaaaaaccaaatttctGAGTCCCAGTGTACGGCAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGGCGTAGGATAGAGCATGCAAATGCAGTTAGGGAAGTCAAAGCTCTGAGAAAATTTGGGAAAGCTGAAACTGCCTTCTCTTATCGGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAATTCATGATTTCGATCCATCTTGGAAGATTGGGGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTTGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTTGTCAGAGCCCATCGGATTTCCAACATCAgGTAGAGGTTTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGATCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCATCTTGCCCGCAAAGATAAGAATCCACTTCCTTGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTTCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCTTGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAACGTTTGGCATATGTGGATCCAGAGTGTTTTGTCACTGGCAAGTTTACACCAGAATCAGATGTATATTCATTCGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTAAGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACTTATCAGCTGGTGAATGGCTGCTTTATCAAAGCGAACAGCTGGCATATTTAGCATTAAGGTGTTGCGAAAAGTCTGGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATTGACACACCACCATATTTGACTTCTAAAAAGCTTCACCGTGTTCCTTCCCATTTTGTCTGCCCTATCCTCCAGGAAGTAATGGAAGATCCGTACATAGCTGCAGATGGCTTTACTTATGAAGCAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACAGATTTGGTACCTAACTATGCTCTACATAATGCAATTCAGGAGTGGCAGCAGCAGTGA 1365 0.419 MKNQRDEILRELQMVQDQNSALKNQISESQCTATELEEKIISAVDLLISFREKRDRRRIEHANAVREVKALRKFGKAETAFSYRVEFPAFSFMEINEAIHDFDPSWKIGEGRYGSVYKGLLCNMHVAIKMLPSYGCQSPSDFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKDKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPCLVQQSLDSADTSTICNNPNERLAYVDPECFVTGKFTPESDVYSFGVILLQLLTGRPLKGLVRDMKCALEKENLKAVLDLSAGEWLLYQSEQLAYLALRCCEKSGLNRPDLVSEIWSVLEPFKATCIDTPPYLTSKKLHRVPSHFVCPILQEVMEDPYIAADGFTYEAEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAIQEWQQQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0801 454 SMART Ubox_2 388 451 IPR003613 GO:0004842|GO:0016567
Ssu7g0801 454 ProSiteProfiles Protein kinase domain profile. 102 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0801 454 Pfam Protein tyrosine and serine/threonine kinase 107 354 IPR001245 GO:0004672|GO:0006468
Ssu7g0801 454 CDD RING-Ubox_WDSUB1_like 389 430 - -
Ssu7g0801 454 ProSiteProfiles U-box domain profile. 384 454 IPR003613 GO:0004842|GO:0016567
Ssu7g0801 454 PANTHER OS02G0152300 PROTEIN 1 453 - -
Ssu7g0801 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 1 453 - -
Ssu7g0801 454 SUPERFAMILY RING/U-box 382 454 - -
Ssu7g0801 454 SUPERFAMILY Protein kinase-like (PK-like) 80 364 IPR011009 -
Ssu7g0801 454 ProSitePatterns Protein kinases ATP-binding region signature. 108 129 IPR017441 GO:0005524
Ssu7g0801 454 Gene3D Transferase(Phosphotransferase) domain 1 176 371 - -
Ssu7g0801 454 Pfam U-box domain 385 453 IPR003613 GO:0004842|GO:0016567
Ssu7g0801 454 Coils Coil 5 39 - -
Ssu7g0801 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 454 IPR013083 -
Ssu7g0801 454 Gene3D Phosphorylase Kinase; domain 1 74 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0801 Ssu-Chr7 16134294 16136620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0801 4 454 U-box Gene Family AT3G49060 54.505 2.08e-170 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu7g0801 PK_Tyr_Ser-Thr 5.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0801 - - gmx:100799675 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0801 7 16134294 16136620 Ssu7g0801 7 16134294 16136620 ECH