Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0800 ATGGGTAGCATCGTAGAAGGGGCTGCAGTTTCGGGAGTGGAAGACACGGACACGGACACAGACACAGTGTACGTGGCGGTGGGAAAGAACGCGGAGAAGACCCAACAATTGTTGCATTGGGCTGTTAAGAATTTCTCTGGCAAAAATATTTGCCTTCTTCATATTcaccaacctcactccctcaATTCGTTTACAGACAGAAATCCCTCTGGGTATGAACCAAAAGACCGTGCAATCAAGGCATTCCAGGAACATGGAAATCAAATGGTGCATGAACTTCTAGACCAATACATTCTCACTCTGGTCCCGGCAGGGGTACGAGCCTATAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATAACGAAAGCTATTGATCAACACAATATTAAATGGCTAGTAATGGGAGCAGCAACAGACAGATATAACTTGGGGGTATACGGTAGGCATACTTCTGACATAGAGGCCACCCCTACATTGTTGGTGCTCAATTCAAATACAGAAGCCAAACAATCAGAAACAATTAAATCAGAATCAATTCCTGATGCATTGAAATATTTAGATTCTGATGATATGGAAGAGATCAAAAGTGTCAGTTCCCACCGTTCATTTTATTCCAAATGGTCCTTTAATAATGTTATGGACATGCCAAAGTTGACTGATTTGATGTTTCATGAGGTCAGATCATCAGACACATTGCCTTCATCACCTGCATCCTTATCATCATTATGTATAAGACAGTTCAGGATGAAGCATTAG 762 0.4016 MGSIVEGAAVSGVEDTDTDTDTVYVAVGKNAEKTQQLLHWAVKNFSGKNICLLHIHQPHSLNSFTDRNPSGYEPKDRAIKAFQEHGNQMVHELLDQYILTLVPAGVRAYKLLIEMDDIEKGITKAIDQHNIKWLVMGAATDRYNLGVYGRHTSDIEATPTLLVLNSNTEAKQSETIKSESIPDALKYLDSDDMEEIKSVSSHRSFYSKWSFNNVMDMPKLTDLMFHEVRSSDTLPSSPASLSSLCIRQFRMKH 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0800 253 CDD STK_N 23 142 - -
Ssu7g0800 253 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 17 145 - -
Ssu7g0800 253 Gene3D HUPs 17 139 IPR014729 -
Ssu7g0800 253 PANTHER OS02G0152300 PROTEIN 17 145 - -
Ssu7g0800 253 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 34 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0800 Ssu-Chr7 16122245 16134213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0800 21 163 U-box Gene Family AT2G45910 37.500 3.09e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0800 - - gmx:100799675 344.354