Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0795 ATGTCAGAATCCGAGGAAGAAAATCCTCCGAGGTCAAAGGCAGCAGAGGAAGGTGGTTGCCCCATGGACTTCGATCTCGACCTGGAAACTTCATGGCCGTTGGATCACATGGCCTTTGCCTCCAACCCCATGTCAACTTTTCTATTCTCAACCACCTCTGACCAACCTTACTCTCCTCTCTGGGCTTTCTCTGATGGAGAGGATGACAGGCACTCCAGGCTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAACTTCGGTAACTGAAAAGCCAGTGGAGAATGATGACAACAAAAAACTTTTGCCACCACTTGTGCCTATGCCACCTGTGGATAATTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCGCTTCGTTACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCCCCTGTGCGGAATGGGAATCGGTATGTGCTTACAACTTCAGGTCAACCTTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACGGTCTCTCTGATGTACATGTTTTCTGTGGATGGAGAGAATGATGGAATTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCGGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAATGCAGTCATGTGTTGGTGTCCTGGAGTTGATAATGACTTCACAGAAGATTAACTACGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCTTACACTCAGATTTGTAATGAAGGCCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTGGCCCAGACATGGATTCCCTGTAGGCATCGGAGTGTTTTGGCCCAAGGTGGTGGTGTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGTATGTCTACAACTGACGTAGCATTCTATATTATAGATGCTCATTTATGGGGTTTTCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAGTCACAGACTTTCATGAACAAAAGACTTTGTTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTCAAGATTGCTTCTGGTGTTGAATTTGAGGATGtttcaattgaaattattgaaGCAACAATTGAAGGAGTTCATACGAGGCTTGAATCTATTCCAATTGCCCCATCGAATAAATCACCACCAAGACATGATAACTCACCAAACATGGGGGAGGAAGTGCCACAGGATCCATcagaaaaacaaatattgatgTACTGTAATGACATCAATGATGGAGGGGGTCTTGGTGATAATGCCGGCTTAAACATTGATCAGATGCCCTCCTTAGAGACTAAAAGCATAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGCCTTGAAGTCTTGCAACGTCATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGTGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGCTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCGAACAAGTTCAGCCAGCCAGCCTCATTAAGCATTAGGCCATCAGAGCCTCAGATGAAAGAGAATGAACTGAATGCCTCCAAAGCATTAGAAACAAACAGACAGGAAGATCAATTGCCAGGAGGAAGGACACAGAATCTTgagaaagtaattaataataaaggtatGTCTACTCGGGAGGTTGGGAAAGAACCTAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCACGGTTCATGCCATGACAGTCCTCCAAATGAAAGTTCACCTGTAAAGGATATATTCATTACTTCCAACAATGATCAATGTGGTGTGCTAAGGAGATCACGAGAGTCAACACTGCAGCCAACTACCAATACGCTAAACCGCCCAACTGCTTACCCTATGCCTGACTTTGTGACTCCAGAACTTCAAGAGCCATTTGGAGGGATGCTGATAGAGGATGCCGGTAGTTCTAAAGACTTGAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATCTTGGAGGATCTGGTTCCAGAAGCTTGTGGGACTAATCTTCCAGGTCCAGATTTGTCTCCTAAGCAAAGCATGGATACTCCTAATAGAGCAGTGACACCTTTTGCAGCTAGGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCTTTGACTTGTGGTATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATCAAGTACCTGGACGATGATCATGAATGGGTTTTGATAGCCTGCGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGGTCCGGGGAGTGA 2958 0.4334 MSESEEENPPRSKAAEEGGCPMDFDLDLETSWPLDHMAFASNPMSTFLFSTTSDQPYSPLWAFSDGEDDRHSRLPASAFSDCHKIFSCDSTSVTEKPVENDDNKKLLPPLVPMPPVDNLDGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDGILGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCRHRSVLAQGGGVKKSCSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRVTDFHEQKTLLGSILATMKQHFQSLKIASGVEFEDVSIEIIEATIEGVHTRLESIPIAPSNKSPPRHDNSPNMGEEVPQDPSEKQILMYCNDINDGGGLGDNAGLNIDQMPSLETKSIKKPLERKRGKTEKSISLEVLQRHFAGSLKDAAKCLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSFPEPSTPNKFSQPASLSIRPSEPQMKENELNASKALETNRQEDQLPGGRTQNLEKVINNKGMSTREVGKEPKRTRTGSGSSEDSTNPTSHGSCHDSPPNESSPVKDIFITSNNDQCGVLRRSRESTLQPTTNTLNRPTAYPMPDFVTPELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNLPGPDLSPKQSMDTPNRAVTPFAARKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCERSGE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0795 985 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 984 - -
Ssu7g0795 985 Gene3D - 887 971 - -
Ssu7g0795 985 MobiDBLite consensus disorder prediction 506 532 - -
Ssu7g0795 985 SMART PB1_new 890 972 IPR000270 GO:0005515
Ssu7g0795 985 PANTHER PROTEIN NLP8 3 984 IPR045012 GO:0003700
Ssu7g0795 985 MobiDBLite consensus disorder prediction 668 812 - -
Ssu7g0795 985 MobiDBLite consensus disorder prediction 747 807 - -
Ssu7g0795 985 ProSiteProfiles PB1 domain profile. 890 972 IPR000270 GO:0005515
Ssu7g0795 985 Pfam RWP-RK domain 584 632 IPR003035 -
Ssu7g0795 985 SUPERFAMILY CAD & PB1 domains 888 975 - -
Ssu7g0795 985 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g0795 985 Pfam PB1 domain 890 971 IPR000270 GO:0005515
Ssu7g0795 985 CDD PB1_NLP 891 971 IPR034891 -
Ssu7g0795 985 MobiDBLite consensus disorder prediction 673 728 - -
Ssu7g0795 985 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0795 Ssu-Chr7 16056643 16060992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0795 259 985 NLP Transcription Factor Family AT4G24020 52.639 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu7g0795 PB1 2.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0795 - - gmx:100786118 1784.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0795 7 16056643 16060992 Ssu7g0795 7 16056643 16060992 PCT