Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0780 ATGGATGCTGAGGGTGGGAAGATTGAAACAAGTATAAGGAAGcctatgattaaaaaatttgctAAAGTTATTGTTGAGGGTGAGGTATATGCGATGGCATATTTCTCTGTGGTGAATAATTACGGCTCCTATAGGGCGACGAGGCATGAATTCAAATTGTTGTTCAATTCAAAGACAAAGGTTCTATCATGTGAAAGTGCTGTTATACCTTCATTTGGTTTACTTGAATGGATTCTGAGCATATTACCAAGACAAAGGGAGAGTCAGATTATTTGCTtgGTGGGAAAAGCTTCTAGGGTGATAGTGCTGGAGTTAGCTAATCACAAgGAGATCATCAAGTGTGCTTTGTTTGGGGATTATGTGGACATGGTGAATGATTTTCTTGCTGTTGGTAGTGCTCAGCGTCCTGTTGTTGTACTCCAACTTGGAAGGGTGAAGAGTTACAAGgGTCAAGTGAATGTTCATAATGTGATGAATGCCTCTAGGTTGCTATGGGATCCACAAATTCCTAAGGCAATTGAGTTTAGGAATGGACTTGCTATTCATGGTATTGAACTGGATGTGCCTATTCGTgaTGGAATTTTTATTGTGTTGGCAAGTGTAGCTGTTGTGATCAAGGGTGATACGTGGTGGTACATGGCTTGTAAGTGCCACGGAGCTGTTGCTCCGGACGGTGGTCTTTATTATTGCCCTGGCTGTGATAGTCATGTGATTGATGTCACACCTTGttttaaattGAAGCCGGAAGTTAGTGATGGGAAAGATGCAGCgtgttttatattgtttgattttgattgtTATGCTCTTCTAAAGAAATCTTGCAAGGAATTGTTGTATATTATGAAGGATCCATCTTTTGTTGAACATCCACCTGAGTGTGATAGCTTAATTGGGAGGGAATTGTTGTTCAAGGTGGAGAAGCAAGCTGATTGTGCGTATCGTTATGAAGATTCTTTTAAAGTAAAGAAGATATGTGTTGATTCTACCttagaaaaagattttatatcaACTCCAGAATCGCTGAAGATGCGCTCCACTCCTTCGTCTTTGCCTGCTGTTGGTGAGGTTGGTGTGCTGTTAGAGGAGTTGTCAAAAGGTCAAACAAGTCTTTCACAGATTGAAATTGGAACTATAGGACTGGGTGAATCTTCTTCAACAAGTTTTCAGTCTATTGACCGTAACAAAGAAAGAGTGAATACTCATCTTGAAAGCGTTATGCTACAGCTTTCGAACAATGAGTCTACAGCTCTTAGACTTCTAGAATTAACGGCTATTCCACTTGGAGATGGTGTTGGAAATGTTGATGCAGAAGTAGATGATCTAAATGAGAAAGTGGAAGTTGTTAGTGAGTGTAGTAATGGTTGTAGAAAGAGGATCAAGTTAAAACCTGTTAAGTTGGAGCAGTATAAATGTTGA 1416 0.3835 MDAEGGKIETSIRKPMIKKFAKVIVEGEVYAMAYFSVVNNYGSYRATRHEFKLLFNSKTKVLSCESAVIPSFGLLEWILSILPRQRESQIICLVGKASRVIVLELANHKEIIKCALFGDYVDMVNDFLAVGSAQRPVVVLQLGRVKSYKGQVNVHNVMNASRLLWDPQIPKAIEFRNGLAIHGIELDVPIRDGIFIVLASVAVVIKGDTWWYMACKCHGAVAPDGGLYYCPGCDSHVIDVTPCFKLKPEVSDGKDAACFILFDFDCYALLKKSCKELLYIMKDPSFVEHPPECDSLIGRELLFKVEKQADCAYRYEDSFKVKKICVDSTLEKDFISTPESLKMRSTPSSLPAVGEVGVLLEELSKGQTSLSQIEIGTIGLGESSSTSFQSIDRNKERVNTHLESVMLQLSNNESTALRLLELTAIPLGDGVGNVDAEVDDLNEKVEVVSECSNGCRKRIKLKPVKLEQYKC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0780 471 Gene3D - 85 182 IPR012340 -
Ssu7g0780 471 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 2 320 - -
Ssu7g0780 471 CDD RPA1_DBD_B_like 94 176 - -
Ssu7g0780 471 CDD RPA1_DBD_A_like 1 61 - -
Ssu7g0780 471 SUPERFAMILY Nucleic acid-binding proteins 2 66 IPR012340 -
Ssu7g0780 471 CDD RPA1_DBD_C 195 324 IPR013955 -
Ssu7g0780 471 SUPERFAMILY Nucleic acid-binding proteins 193 311 IPR012340 -
Ssu7g0780 471 SUPERFAMILY Nucleic acid-binding proteins 95 184 IPR012340 -
Ssu7g0780 471 Pfam Domain of unknown function DUF223 2 67 IPR003871 -
Ssu7g0780 471 Gene3D - 183 331 IPR012340 -
Ssu7g0780 471 PANTHER REPLICATION FACTOR A 1, RFA1 2 320 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu7g0780 471 Gene3D - 1 66 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0780 Ssu-Chr7 15683314 15685866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0780 1 280 Core DNA Replication Machinery Family AT4G19130 19.288 6.93e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0780 - - lja:Lj1g3v3385890.1 305.834