Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0770 ATGGGGTGCCAGCCATtggaaaaggcaaaatcaaaACATAAGAAGGGCTTATGGTCACCTGAAGAAGACAACAAGCTCAGAAATTACATCCTTAAGCACGGTCATGGCTGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGCTGTAGATTAAGGTGGATTAATTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAAGAGGAGACAATCCTGACCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGGACAGATAATGAGATTAAAAACTACTGGCATTCATATTTGAAGAAGAGAGTGGCCAAAGCAAAGGAAATGGAATCTCATAACCAAATTAAGTATGCTAGCTCAAGCTCAGATACCATGGACTCTTCACATTCTCTCCAAAAACTAGCAACTCAAGGCCCACAGAATTATAACTTCACCAAAGAGGCTTGTCAAAGCTCCTTACCAAAACTGCTATTTGCTGAGTGGCTTTCACTGGATCATGTACGCGGTGGGAACCCTGCAAATTCAGTTGACTCTCTGGGTTTGGGGAATGGATTTGATCAAAATTCAACTTTTCAAGAAGCTGCAATTCATGATATGTCGGAGGTACCCTTTGGTGGAGAGTATCATAGATGTGTAACTAACGTTTCAGCCCCTGAGACGTTCAATTCACAGCTAAAGTTTGCAAATCAAATGGTGGAAAATGGTTTCATCCATTGTATACCCGGGGTTGACTTAACTAGCAATTTCAGCATGAGCAATGATGCAATGATGTACGTATGA 822 0.4185 MGCQPLEKAKSKHKKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKAKEMESHNQIKYASSSSDTMDSSHSLQKLATQGPQNYNFTKEACQSSLPKLLFAEWLSLDHVRGGNPANSVDSLGLGNGFDQNSTFQEAAIHDMSEVPFGGEYHRCVTNVSAPETFNSQLKFANQMVENGFIHCIPGVDLTSNFSMSNDAMMYV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0770 273 CDD SANT 18 62 IPR001005 -
Ssu7g0770 273 PANTHER MYB DOMAIN PROTEIN 55 154 266 - -
Ssu7g0770 273 SMART sant 67 115 IPR001005 -
Ssu7g0770 273 SMART sant 14 64 IPR001005 -
Ssu7g0770 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ssu7g0770 273 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Ssu7g0770 273 PANTHER MYB TRANSCRIPTION FACTOR 1 154 - -
Ssu7g0770 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu7g0770 273 PANTHER MYB DOMAIN PROTEIN 55 1 154 - -
Ssu7g0770 273 Gene3D - 70 143 - -
Ssu7g0770 273 PANTHER MYB TRANSCRIPTION FACTOR 154 266 - -
Ssu7g0770 273 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ssu7g0770 273 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ssu7g0770 273 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu7g0770 273 CDD SANT 70 113 IPR001005 -
Ssu7g0770 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu7g0770 273 Gene3D - 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0770 Ssu-Chr7 15542433 15545101 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0770 8 189 MYB Transcription Factor Family AT3G48920 55.435 7.52e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g0770 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0770 K09422 - gmx:778167 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0770 7 15542433 15545101 Ssu7g0770 7 15542433 15545101 ECH