Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0760 ATGGCTCCGCCGGTGGAAAACAACGGCGACTCCACGGGCGGCGACTCTCAGAGATCCATTCCGACGCCGTTTCTCACCAAGACCTACCAGCTCGTCGAGGATCACACCATCGACGATGTGATTTCGTGGAACGACACTGGATCATCCTTCATCGTGTGGAATACTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTTGTCCGCCAACTCAACACTTATGGATTCAGAAAAGTTGTACCCGATCGGTGGGAATTTTCGAACGAGTGCTTCCGAAGAGGCAAGAAACGGCTCCTCTGCGAAATTCAGCGGCGGAAGATTCTATCGGCATCGCCGCCGGCGGGAGAAACTGCGACCGTGGCGGTTCCGTCGCCGCGGCCGCTGTCTGCGATTCCGACGGCGAAGCCGTTCGTGTCGCCGTCGAACTCAGCGGAGGAGCAGGTGATTTCGTCGAACTCGTCGCCGTCGAGAGCGCCGGCAGAGCTGTTGGACGAGAACGAGAGGCTGAGAAAGGAGAACATTCTGTTGACGAAGGAATTGGAGGAGATGAGGTCGCTCTGTAACAATATATTTACTCTCATGTCGAATTACGCAAACGCTCAAGCTGACGGTGGTTCCGTGGTGGCGAAGACGCTTCGTTTGATGCCGGCGAAGCGGTGCTCCGGCGAGGATGCGGTGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGTACGAAGCGAGCGAGGGAGGAAGGACGAGGAGCGGAGTATGATACGGTTTTGAGTCTGCATCAGCCGTTCCATGCGGACGTGAAATCTGAACCGTTAGATTTCACGAGACATGGCGAAAATAGAAAAACGCCGTGGCTGAATCAGTGTCATGTATCAAATCAGCGATTGTGTAATTGA 918 0.5403 MAPPVENNGDSTGGDSQRSIPTPFLTKTYQLVEDHTIDDVISWNDTGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGKKRLLCEIQRRKILSASPPAGETATVAVPSPRPLSAIPTAKPFVSPSNSAEEQVISSNSSPSRAPAELLDENERLRKENILLTKELEEMRSLCNNIFTLMSNYANAQADGGSVVAKTLRLMPAKRCSGEDAVEEMNPKLFGVAIGTKRAREEGRGAEYDTVLSLHQPFHADVKSEPLDFTRHGENRKTPWLNQCHVSNQRLCN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0760 305 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 290 IPR027725 -
Ssu7g0760 305 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0760 305 Coils Coil 174 194 - -
Ssu7g0760 305 Gene3D - 16 114 IPR036388 -
Ssu7g0760 305 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Ssu7g0760 305 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0760 305 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g0760 305 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0760 305 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0760 305 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0760 305 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 12 290 - -
Ssu7g0760 305 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0760 Ssu-Chr7 15337837 15338842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0760 2 305 HSF AT5G62020 50.150 8.58e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu7g0760 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0760 K09419 - gmx:100780987 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0760 7 15337837 15338842 Ssu7g0760 7 15337837 15338842 ECH
Ssu7g0760 7 15337837 15338842 Ssu7g0760 7 15337837 15338842 PCT