Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0757 ATGCAAAATTCGTCTTCCTTCTCCTACTCAACTCAAAGGAAAATGGAAGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGAATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTTGAAGGCGTATCTGGTGATGATCAGGATGGAGGTGATGATCAGCCACAGAGGAAGAAGAGATATCACAGACACACTCCTAACCAGATTCAAGAGCTTGAGTCtttcttCAAGGAGTACCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAGCTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGAGAAGCTCAGAGCTGAGAACAGTTTGATGAAAGAAGCCATGTCAAATCCAGTGTGTAACAACTGTGGAGGCCCAGCTATTCCTGGCCAAATTTCATTCGAGGAGCACCAGATTAGAATTGAGAACGCTAGACTAAAGGATGAATTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAACCAATCTCATCATTGACCGGTCCCATGGCTCTCCCAACCTCAAATTCTGGTCTAGAACTTGGTATTGGAAGGAATGGGATTGGGGGTTCAAGCACTCTTGGCACTCCCTTGCCAATGGGACTTGATTTGGGAGATGGAGTGTTGGGCACTCAACCTGCAATGCCTGGGATTAGGCAACCGTTGGGATTGATGGGAAATGAAGTTCAGCTTGATAGATCTATGCTCATAGATCTTGCATTGGCTGCTATGGAGGAATTACTGAAGATGACTCAGGCAGAGAGCCCTCTTTGGATTAAGAGTTTGGATGGAGAAAAGGAAATGTTTAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGTTACGTAACTGAAGCAACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCACTTGTGGAAACCTTGGTGGACACGAATCGATGGGCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCAACCTCGATGTTATATCTAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTTCAATTGCTTTCACCACTAGTCCCCGTTCGTCAAGTAAGATTTCTCCGATTCTGTAAGCAGCATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTATTGAGATTGGTCATGATACTGCTAACGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGCATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTTGTCCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCACAGATGGATCGCCACCCTCCAAAGGCAGTGTGAATGCTTGGCTATCCTCATGTCTTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTAGGAGAAGCATGTTGAAATTGGCACAACGCATGACTGGTAACTTCTGTTCCGGGGTTTGTGCCTCATCCGCTCGCAAGTGGGACAGTCTTCATATAGGGACTCTTGGTGATGACATGAAAGTGATGACTAGGAAAAATGTGGATGACCCCGGTGAGCCTCCCGGGATCGTGCTCAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCCCGGCAAAGGCTGTTTGACTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCGATGCAGGAGATGGTCCATATTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCCAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGACGCGTCATGCTCAGTGGTGGTATATGCACCGGTTGACGTGCAATCGTTGAACGTGGTGATGAGTGGGGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGTTTTGCCATTCTTCCTGATGGTCATTGCAACAACAGTTGCAACGGGACTTTGCAGAAGGGTGCTGCCAGTGACGGTGGTGGGGGAAGCCTTCTCACAGTTGGGTTCCAAATTCTGGTGAATAGTCTCCCAACAGCCAAGCTCACAGTGGAGTCCGTTGATACTGTGAATAACCTCATCTCGTGCACCATTCAGAAGATCAAAGCTGCTCTCAGAGTTGCATGA 2295 0.471 MQNSSSFSYSTQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFEGVSGDDQDGGDDQPQRKKRYHRHTPNQIQELESFFKEYPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSLMKEAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTGPMALPTSNSGLELGIGRNGIGGSSTLGTPLPMGLDLGDGVLGTQPAMPGIRQPLGLMGNEVQLDRSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEMFNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLVDTNRWAEMFPSMIARAVNLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFLRFCKQHAEGVWAVVDVSIEIGHDTANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTGNFCSGVCASSARKWDSLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCNNSCNGTLQKGAASDGGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKAALRVA 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0757 764 CDD homeodomain 67 125 IPR001356 GO:0003677
Ssu7g0757 764 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Ssu7g0757 764 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Ssu7g0757 764 MobiDBLite consensus disorder prediction 1 15 - -
Ssu7g0757 764 Coils Coil 119 154 - -
Ssu7g0757 764 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Ssu7g0757 764 MobiDBLite consensus disorder prediction 32 46 - -
Ssu7g0757 764 SMART START_1 277 501 IPR002913 GO:0008289
Ssu7g0757 764 MobiDBLite consensus disorder prediction 1 77 - -
Ssu7g0757 764 SMART HOX_1 66 129 IPR001356 GO:0003677
Ssu7g0757 764 Coils Coil 754 764 - -
Ssu7g0757 764 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 762 - -
Ssu7g0757 764 Gene3D - 55 141 - -
Ssu7g0757 764 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Ssu7g0757 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 762 IPR042160 -
Ssu7g0757 764 SUPERFAMILY Bet v1-like 529 758 - -
Ssu7g0757 764 SUPERFAMILY Homeodomain-like 53 125 IPR009057 -
Ssu7g0757 764 CDD START_ArGLABRA2_like 272 500 - -
Ssu7g0757 764 Pfam START domain 278 501 IPR002913 GO:0008289
Ssu7g0757 764 SUPERFAMILY Bet v1-like 270 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0757 Ssu-Chr7 15195242 15200101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0757 20 761 Homeobox Transcription Factor Family AT3G61150 62.467 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu7g0757 START 4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0757 K09338 - gmx:100785102 1442.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1975 2 72489500 72495270 Ssu7g0757 7 15195242 15200101 ECH
Ssu7g0757 7 15195242 15200101 Ssu7g0757 7 15195242 15200101 ECH