Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0753 ATGGGGCTTCCTCAAACACACCATCAAGAACAAGTCACTCCCCCACCGCCACCACCCTCCGCCCTCGACACCCACTTTGATTCTTCAACTCCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCTACCGCCTGCCGTCGCCGAGGCGCTCTCGCCGCCGCCCATGCCGCGGCCGAGGTTGTCAGACTCACCAGCAGCGGCGTCGCCGGAACTAGTACTACCACCAGACCCTCCGCCGTCGCCGGGGCGGCTGGTGTTAGCAGGCTGCGGTGGCCGGAGGAGACCGTCGCCGTTAAGATACAATCGGCGTTCCGTGGTTACTtgGCAAGGAGGGCATTGAGGGCGCTTAAAGCATTGGTAAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCAGATATGCTCAGGCGCATGCAAACATTGGTGAAACTTCAGGCCCAAGCACGTGCAAGTCGTGCGCACTTGTCAGATAATACGCGCTCTTTCAAGTCTTCCCTTTCTCACTACCCTGTCCCTGAAGACTATGAACACCCACCTCGTGCCTTCAGTACAAAATTTGATGGATCTTCTGTCCTTAAGAGATGTAGTTCCAATGCCAATTTTAGGAGCCTTGACTCAGAACGAGCCCGGTTTGATTCCAACTGGTTAAACCGTTGGATGGAATTAGATAACATGTGCAGCCAAACTGGAGATGCTTCATTTAAAAATGGACGCCCTGATGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGTCCCACCACAGTAGCACCTCCTTTCAGACGGCACATTATTATTTGAGTTCTGATTATAATAATGAGAACTCTACGGCACACGAGTCTCCATCGAAACGCTCAACAAAGGCTCTAAATCAAAGTTTCTCATCAAGGGAGGTCTTGCAGCGAAACTCTTTGAAGTTTcacaaaggaaaagaagaagcaacTTCAAGAACTGCTGACAATAGTCCACAAGCACTTTCTGCCACGTCTAGAAATGGAAGTGGTGTAAGGAGAGGTCCCTTCACACCTACCAGGAGTGAGTGTTCGTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCCAACACTGAATCTTTTCGAGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGATACGGTTCCACTAGGAGGCCTGTTCAGGGTATTTGTGATGTGGTGGGGCCTAATTCAGACCGGGATTCAGATTTAAGGAACAAAGTCTTACCTGCCTCTTAA 1299 0.4988 MGLPQTHHQEQVTPPPPPPSALDTHFDSSTPLDANKHAIAVAAATACRRRGALAAAHAAAEVVRLTSSGVAGTSTTTRPSAVAGAAGVSRLRWPEETVAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVKLQAQARASRAHLSDNTRSFKSSLSHYPVPEDYEHPPRAFSTKFDGSSVLKRCSSNANFRSLDSERARFDSNWLNRWMELDNMCSQTGDASFKNGRPDDDKSDKILEVDTWRPHFKSHHSSTSFQTAHYYLSSDYNNENSTAHESPSKRSTKALNQSFSSREVLQRNSLKFHKGKEEATSRTADNSPQALSATSRNGSGVRRGPFTPTRSECSWGFFSGYSGHPNYMANTESFRAKVRSQSAPRQRLEFDRYGSTRRPVQGICDVVGPNSDRDSDLRNKVLPAS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0753 432 MobiDBLite consensus disorder prediction 314 328 - -
Ssu7g0753 432 PANTHER IQ-DOMAIN 5-RELATED 29 427 - -
Ssu7g0753 432 MobiDBLite consensus disorder prediction 285 313 - -
Ssu7g0753 432 SMART iq_5 117 138 IPR000048 GO:0005515
Ssu7g0753 432 SMART iq_5 94 116 IPR000048 GO:0005515
Ssu7g0753 432 Pfam IQ calmodulin-binding motif 119 136 IPR000048 GO:0005515
Ssu7g0753 432 Pfam IQ calmodulin-binding motif 99 116 IPR000048 GO:0005515
Ssu7g0753 432 MobiDBLite consensus disorder prediction 329 351 - -
Ssu7g0753 432 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Ssu7g0753 432 MobiDBLite consensus disorder prediction 407 432 - -
Ssu7g0753 432 MobiDBLite consensus disorder prediction 285 353 - -
Ssu7g0753 432 Gene3D - 95 147 - -
Ssu7g0753 432 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Ssu7g0753 432 PANTHER CALMODULIN-BINDING PROTEIN 29 427 - -
Ssu7g0753 432 MobiDBLite consensus disorder prediction 1 29 - -
Ssu7g0753 432 Pfam Protein of unknown function (DUF4005) 334 395 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0753 Ssu-Chr7 15145243 15150959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0753 32 409 IQD Protein Family AT5G62070 45.855 1.23e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0753 - - gmx:100783694 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0753 7 15145243 15150959 Ssu7g0753 7 15145243 15150959 ECH
Ssu7g0753 7 15145243 15150959 Ssu7g0753 7 15145243 15150959 PCT