Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0744 ATGAGGCCTATTTTCTGTggaaattttgaatatgatGCCCGACAGTCGGAGCTGGAGAGGCTTTTTAAACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGACGAGAGAGATGCTGAGGCTGCGATTCGTGCCCTTGATCGGGTAGAATTTGGTCGGAAGGGACGCAGACTCCGCGTGGAATGGACAAAGGTAATATATCATAAGTCATTTTTTGTGAGATTCCATTATGTTTTCATCATCATTGCACATACTTTGTTGCAGCATGAACGTGGTGTAAGAAGGCCTGCTGCTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCttgtttgtaattaattttgatacatacCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTTATTTCGGTTGAATTTGCTGTtaaagatgatgatgataggCGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGCCAACGTGGTAGAAGCCATGATGGTAGACGATCACCTAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGCCCAGTCCATATCAGAGAGAGAGGAGCAGCCCTGACTATGGCCGTGGCCGTAGCCGTAGCAGAAGCCCCCTTCGGAGAGAGCGTGCTAGCCCTGCTTATGTGCGTAGAAGCCTTAGTCCATATAGAAGAGAGAGGGAGGGTTCTGACCCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGCATTTCTCCTTCCCATAGTCCTGAAGAAAGAGGAAGGAAAAGCCCATTAAGCCCTCAAAATGTTCGCGGTTCTAGCTGTAGTCCTCGTGATACTGGGAAGGCTAGCCCTGAAAACGGACATGGCTCTGGAAGTCCTGATGAAAAGGGGAATCCCAGCCCTTACAATGGTTATGGAGGAAGCCCAAATACTATGCCTGATCCCAGAGACAGCCCCAACTATGGTGGTCCTGAAAGCCCCATGCATGAAAGATACCGCAGCCAGTCACCCCCGGCGGAAGAATGA 1191 0.4618 MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKVIYHKSFFVRFHYVFIIIAHTLLQHERGVRRPAASRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRGRSHDGRRSPSPYRRERGSPDYGRGPSPYQRERSSPDYGRGRSRSRSPLRRERASPAYVRRSLSPYRREREGSDPVRDSSRSPYHKERGRTDHGISPSHSPEERGRKSPLSPQNVRGSSCSPRDTGKASPENGHGSGSPDEKGNPSPYNGYGGSPNTMPDPRDSPNYGGPESPMHERYRSQSPPAEE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0744 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Ssu7g0744 396 SUPERFAMILY RNA-binding domain, RBD 4 73 IPR035979 GO:0003676
Ssu7g0744 396 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 103 230 - -
Ssu7g0744 396 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 74 - -
Ssu7g0744 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Ssu7g0744 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Ssu7g0744 396 Gene3D - 1 78 IPR012677 -
Ssu7g0744 396 Gene3D - 107 201 IPR012677 -
Ssu7g0744 396 MobiDBLite consensus disorder prediction 320 335 - -
Ssu7g0744 396 SMART rrm1_1 120 186 IPR000504 GO:0003723
Ssu7g0744 396 SMART rrm1_1 3 70 IPR000504 GO:0003723
Ssu7g0744 396 MobiDBLite consensus disorder prediction 192 396 - -
Ssu7g0744 396 MobiDBLite consensus disorder prediction 244 315 - -
Ssu7g0744 396 CDD RRM1_AtRSp31_like 2 73 - -
Ssu7g0744 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 190 IPR000504 GO:0003723
Ssu7g0744 396 SUPERFAMILY RNA-binding domain, RBD 104 196 IPR035979 GO:0003676
Ssu7g0744 396 MobiDBLite consensus disorder prediction 192 230 - -
Ssu7g0744 396 PANTHER BNAC08G47240D PROTEIN 103 230 - -
Ssu7g0744 396 PANTHER BNAC08G47240D PROTEIN 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0744 Ssu-Chr7 14951380 14954460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0744 118 198 Eukaryotic Initiation Factors Gene Family AT1G49760 32.584 8.46e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0744 K12893 - gmx:100796509 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0744 7 14951380 14954460 Ssu7g0744 7 14951380 14954460 ECH