Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0742 ATGATATCAGGTCGGTGTGCAGCTTGCaaaaatcaaagaagaaaatGCCCTTCGGATTGCATTTTCTCTCCTTATTTCCCTTCTAATGATCCTCAAAGATATGCTAGCGTTCACAGAATATATGGTGGCAGCAACGTTGGAAAAATGCTTCAGCAAATTCCACCCTATGTCCGAGCACAGGCTgcagataatttatattatgaagcACAATGTCGTATTCAAGATCCTATTTATGGTTGTTATGGAATTATCTCTCAACTTGTTCAACAGATTCATAGTACAGAAACTGAGTTAGCCAAAATCCAAGCTCAGATTAGCATCCTCAAGCTCCAAAGCCCACAAGTTGAATATGAATCAAATTTCGATGTCTTGTTTGCACAGAGTAACATGGGGCAGTTTCAGTTCGGCGGCCATTCAAGCCAAACTCCTTGGTTCAAATGA 441 0.381 MISGRCAACKNQRRKCPSDCIFSPYFPSNDPQRYASVHRIYGGSNVGKMLQQIPPYVRAQAADNLYYEAQCRIQDPIYGCYGIISQLVQQIHSTETELAKIQAQISILKLQSPQVEYESNFDVLFAQSNMGQFQFGGHSSQTPWFK 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0742 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Ssu7g0742 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Ssu7g0742 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 115 - -
Ssu7g0742 146 Coils Coil 84 111 - -
Ssu7g0742 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0742 Ssu-Chr7 14935790 14936826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0742 1 116 AS2 family AT3G26660 56.897 5.83e-48 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu7g0742 LOB 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0742 - - gmx:100790640 210.305