Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0739 ATGTTTTCCATCAATCGTTTCTCCGACCCACGTGCGACCTCTCCGGTGTCGGGAAGTTCCCGTCCGGCGGCGCTGTCGGACGAGGAGGTTTTTCTGGCGGCGAGCCACCCTAAGAAGCGCGCAGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGTGGCGTGAGAAAAAGGAACTCCGGCAAGTGGGTGTGCGAGGTGCGTGAGCCCAACAAGAAGACGAGGATTTGGCTCGGGACCTTTCCCACGGTGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCGATCGCGCTTAGGGGAAGGTCGGCCTGCCTCAATTTCGCCGACTCAGCGTCGCGGCTGCCGGTGCCGGCGACGGCGGAGGCCAGGGACATTCAGAAGGCGGCGGCGGAGGCCGCGGAGGCGTTTCGGCCGCGGATGGAGTCGGAGACAAAGGATGACGAGGTGGCGGCGGCGGCTGCGGCTGCGGCTGCGGCGGCGACGGAGCATGGAGAAGAAGAGGAGATGGTGCCGGAGTTTCTGAGGAACATGGTACTTATGTCGCCGACGCATAGCGTCGGGGGTGAGTATAGATATGCTGACGTGGAATTTGACGATGCTGAAGTTTCATTGTGGAGTTACTCGACttag 636 0.6289 MFSINRFSDPRATSPVSGSSRPAALSDEEVFLAASHPKKRAGRKKFRETRHPVYRGVRKRNSGKWVCEVREPNKKTRIWLGTFPTVEMAARAHDVAAIALRGRSACLNFADSASRLPVPATAEARDIQKAAAEAAEAFRPRMESETKDDEVAAAAAAAAAAATEHGEEEEMVPEFLRNMVLMSPTHSVGGEYRYADVEFDDAEVSLWSYST 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0739 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Ssu7g0739 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Ssu7g0739 211 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 13 209 - -
Ssu7g0739 211 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Ssu7g0739 211 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g0739 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 209 IPR045277 GO:0003700
Ssu7g0739 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Ssu7g0739 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Ssu7g0739 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Ssu7g0739 211 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Ssu7g0739 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Ssu7g0739 211 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0739 Ssu-Chr7 14846963 14847598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0739 4 209 AP2-EREBP Transcription Factor Family AT4G25470 55.656 2.15e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g0739 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0739 - - aprc:113872706 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0739 7 14846963 14847598 Ssu2g2820 2 89203610 89204476 ECH
Ssu7g0739 7 14846963 14847598 Ssu7g0739 7 14846963 14847598 ECH
Ssu7g0739 7 14846963 14847598 Ssu7g0739 7 14846963 14847598 PCT