Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0729 ATGGAAGCGAATCCCACCCGCGACGGCGATTTCAAAGAAGACGACGACACGTCGGAGACGCCGCCGCCAACGGTGGACCCGCCGGAGTCGCCGCCGCCGCCGTCACTGAAAGAAGAACTCACGGACACGGACGCGTCTCTTCCGGTGAGCGTCATCCCGACGCCGTTGACGGTGTCGACGCCGGCGGCGAAGCGGCCGTCGAAGGACCGGCACACGAAGGTGGAGGGTCGCGGGCGGCGAATCCGCATGCCGGCGACGTGCGCGGCGAGGATCTTCCAGCTGACGCGCGAGCTGGGACACAAGTCCGACGGAGAAACAATCCGGTGGTTGCTGGAGCACGCCGAGCCGGCGATCATCGAGGCCACCGGCACTGGCACCATCCCGGCGATCGCGGTGACCGTCGGCGGCGCCCTCAAGATTCCGACGTCCTCGGCGGCGAGACCCGAGGGAGAAGACACGCCGAGGAAGCGGAGGAGGAGAGCGTCCAACAGCGAATTCATCGACGTGAACGAAAACCAGGTTTCGGTGTCTTCAGGGCTCGCACCAATCGCACAAACCGCATACGGAGGTGCCGCTGCTGGACTCGTTCCTCTGTGGCACGGGTCCAACGCTTCTGGGCCTTTCTTCATGTTCCCCAACACTTCTAACCCGCCTCAGTATTGGGCCATTCCCGCAACCGCGGCCCCGTTCTTCAACGTCCAGGCCCGGCCCATTTCGGGCTTCGTTTCTGCCATGCAGATGCAACGTGATAACCACTCTTCAAAAGCTGCTGCCTCGGATTCTGCTAACTCGTCGTCCACTATGGCTCCTACTATGAGCTCAGTGAGTGTTACTAGTTCTGTTTCTGTTTCTGGTTCCTCTTCTTCCGCTGCTACAACAACCCAGATGCTCAGGGATTTCTCTTTGGAAATTTATGACAAGAAAGAGCTACAATTTTTGAGTCAACCCCCACCCTCTTCAAAGCCttga 969 0.6017 MEANPTRDGDFKEDDDTSETPPPTVDPPESPPPPSLKEELTDTDASLPVSVIPTPLTVSTPAAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVTVGGALKIPTSSAARPEGEDTPRKRRRRASNSEFIDVNENQVSVSSGLAPIAQTAYGGAAAGLVPLWHGSNASGPFFMFPNTSNPPQYWAIPATAAPFFNVQARPISGFVSAMQMQRDNHSSKAAASDSANSSSTMAPTMSSVSVTSSVSVSGSSSSAATTTQMLRDFSLEIYDKKELQFLSQPPPSSKP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0729 322 MobiDBLite consensus disorder prediction 1 19 - -
Ssu7g0729 322 MobiDBLite consensus disorder prediction 1 78 - -
Ssu7g0729 322 MobiDBLite consensus disorder prediction 149 163 - -
Ssu7g0729 322 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 318 IPR005333 GO:0003700
Ssu7g0729 322 MobiDBLite consensus disorder prediction 21 35 - -
Ssu7g0729 322 MobiDBLite consensus disorder prediction 142 163 - -
Ssu7g0729 322 MobiDBLite consensus disorder prediction 252 271 - -
Ssu7g0729 322 MobiDBLite consensus disorder prediction 47 61 - -
Ssu7g0729 322 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 53 318 - -
Ssu7g0729 322 Pfam TCP family transcription factor 67 146 IPR017887 -
Ssu7g0729 322 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Ssu7g0729 322 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0729 Ssu-Chr7 14689769 14690737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0729 61 313 TCP Transcription Factor Family AT5G51910 54.135 1.80e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu7g0729 TCP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0729 - - gmx:100819475 445.277