Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0726 ATGGTGAGGGGAAAGAttgaaatgaagaaaattgAGAATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTCGAAGTGGTCTTCTAAAGAAAGCTCACGAGCTATCCGTTCTTTGTGATGCAGAAGTAGCAGTGATAGTCTTCTCACAGAACGGGAAGCTCTATCAGTTCTCAAGTTCTGAcATGACAAAGGTTTTGGAACGATACCATCAATATACCAAAGATGTTCCTGCCAATAAGTTTGGAGATGAGTATATCCAGCAACTGAAGAACGACTCCGCAAGCATGGCAAAGAAGATTGAGCTTCTTGAACTTTCTAAAAGGAAGCTGTTGGGACAAAGCTTAAGTTCTTGTTCAAATGATGAACTCCGAGGAATTGAGGAGCAGCTGCACAGAAGTTTGCAAAGAGTCAGACAGAGAAAGGATCAACTATATAAGGAGCAGATTGAGCAACTAAAATCCCAGGAGAGTAGCTTGCGGAAAGAGAATGCTGAATTAAGTGCAATGTGGCAGAGGGCGGAAAAGACACCCCAGCAGCAGCAACGGGAAGCAGAAGCCGAAGCCGAAGCAGCACCCCACTGTTCAAGTAGCCAGACTTTAGATGTGGATACAGAATTATTTATTGGACTGCCACAGCAGCGTtgctga 648 0.4306 MVRGKIEMKKIENATSRQVTFSKRRSGLLKKAHELSVLCDAEVAVIVFSQNGKLYQFSSSDMTKVLERYHQYTKDVPANKFGDEYIQQLKNDSASMAKKIELLELSKRKLLGQSLSSCSNDELRGIEEQLHRSLQRVRQRKDQLYKEQIEQLKSQESSLRKENAELSAMWQRAEKTPQQQQREAEAEAEAAPHCSSSQTLDVDTELFIGLPQQRC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0726 215 MobiDBLite consensus disorder prediction 169 198 - -
Ssu7g0726 215 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu7g0726 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Ssu7g0726 215 PANTHER MADS BOX PROTEIN 1 211 - -
Ssu7g0726 215 Coils Coil 127 169 - -
Ssu7g0726 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Ssu7g0726 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu7g0726 215 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu7g0726 215 Coils Coil 86 106 - -
Ssu7g0726 215 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Ssu7g0726 215 PANTHER MADS-BOX PROTEIN SOC1 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0726 Ssu-Chr7 14637967 14673544 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0726 1 214 MADS-box Gene Family AT4G22950 49.065 5.23e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu7g0726 K-box 5.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0726 - - gmx:100800580 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0726 7 14637967 14673544 Ssu7g0726 7 14637967 14673544 ECH