Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0721 ATGGGAAGAGGGAAGGTGGTTGTGGAGAGAATACAGAACAAGATCAATCGGCAAGTAACCTTCTCAAAGCGCAGGAATGGTTTGCTGAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCCGAAATCGCCCTCATCATCTTCTCCAGCCGTGGCAAGCTTTTTCAGTTCAGCAGCACTGACATTAACAGAATCATTGAGAAATATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGACGTAGTTGAACATCAATCGCAGCAGTGCTTATACGAGGAGCTTTTGATATTAAGAGTCAAGCATGAATCACTCCAACGAACACAAAGGAATCTTCTGGGAGAAGAACTTGAGCCACTTAGCATGAAAGAATTGCTTAGTTTAGAGAAACAACTGGATAGAACGCTTGAACAAGCTCGGAAGCACCTAACGCAGAAGCTGTTGTCACGAATTGACGAATTACATGGAAAGGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTAagGAAAAATGCACCCAGATTTGTGAAGGTTCTACTAATAACCATATTTGGTTGCACGATGCACAAGTCAATCAGTTTGAATATGGAACAGCAGGTTCGTTTCGGCTTCAGCAAGAGCAAACTACTGcttcaaaaggaaaagaaatagacACGAGGACTGATCAAGGCCAAAGCAGtcataataagaataattaa 705 0.4142 MGRGKVVVERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQFSSTDINRIIEKYRQCCFNMSQTGDVVEHQSQQCLYEELLILRVKHESLQRTQRNLLGEELEPLSMKELLSLEKQLDRTLEQARKHLTQKLLSRIDELHGKVHNLEQVNKHLESKEKCTQICEGSTNNHIWLHDAQVNQFEYGTAGSFRLQQEQTTASKGKEIDTRTDQGQSSHNKNN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0721 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu7g0721 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu7g0721 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu7g0721 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu7g0721 234 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Ssu7g0721 234 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 224 - -
Ssu7g0721 234 Coils Coil 151 171 - -
Ssu7g0721 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu7g0721 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu7g0721 234 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu7g0721 234 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu7g0721 234 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Ssu7g0721 234 MobiDBLite consensus disorder prediction 208 234 - -
Ssu7g0721 234 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Ssu7g0721 234 PANTHER MADS BOX PROTEIN 1 224 - -
Ssu7g0721 234 Coils Coil 122 145 - -
Ssu7g0721 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0721 Ssu-Chr7 14568494 14579272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0721 1 173 MADS-box Gene Family AT1G24260 52.778 1.97e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu7g0721 K-box 9.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0721 K09264 - gmx:100802197 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0721 7 14568494 14579272 Ssu7g0721 7 14568494 14579272 ECH