Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0713 ATGGAAGTTGACGGCGGCGGCGAAGCGCTCCCCACCTCTCTCTTACTCTCTCTCTATCTCATTCGCAACCAGATCGATCCTACAATGGTGAGCGCTCCCTCCGTCGCTTCGTGTACATGGCGAAGCTGGCAGAGCAAGTCGAACGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCTACCGTCGGTTGAGAACAAAGAGATCGCGATGAACCCTTTACAGCCAAGTGATGAGTTGTACTTTCAGATTTCACCTGACAATTATTATTCCCTACCAATCCAAACAACCCCAGAAAATCAGATCTTGCATGATCCTGTGATGGATGGCAGTGGTCTAATTCCTTGTACAAGTCAAAAGGGAAATAAGGGCAAGCAGCGAGAAAAGTTACCTTCTTGGGGAACTGAAAAGATTACAACCATAGATGAAAACAAGAAGTGGATGCATAGAGAGACCGAAAAACAAAGAAGGCAAGAAATGGCCAGGCTTTACACCACCTTTAGATCTCTTCTGCCTCTTGAAtatattaagGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACGAATTACATCAAGGACCTTCAAAATAAGGTGAAACAGTTGCAAGCCAAGAGGGATAAGTTAATGAAGTTGTCTAATTTGAGTCCTGTTGGTTCTGAGAGTGGACGCTTTACTACCCATCTTCCAATATGTGTCATTGTTCATCCTTATTCAGGAGGTCTTCAGATTAAGTGTAGTTATAGCTTCAGGAAATATGGGTGTCCTTTGTCAAGAGTGCTAGACGTAGTGCTTAAAGAAGGGCTTGATGTGGTCAACTGTATTTCCACCAAAACAGATGACATGTTCATACACACTATCCGATCAGAGGATCCACATGTGATGGCCGGGACTATTTACACTGAACTGCAAAGGAAGCTTATCGAAGCAATATCATCTtcaaGTTCGGAGGAGAGACTGTCTGAGCCTGAAAACTGCTGA 984 0.4411 MEVDGGGEALPTSLLLSLYLIRNQIDPTMVSAPSVASCTWRSWQSKSNATKRWWSSWRRSLPSVENKEIAMNPLQPSDELYFQISPDNYYSLPIQTTPENQILHDPVMDGSGLIPCTSQKGNKGKQREKLPSWGTEKITTIDENKKWMHRETEKQRRQEMARLYTTFRSLLPLEYIKGKRSISDHMHEGTNYIKDLQNKVKQLQAKRDKLMKLSNLSPVGSESGRFTTHLPICVIVHPYSGGLQIKCSYSFRKYGCPLSRVLDVVLKEGLDVVNCISTKTDDMFIHTIRSEDPHVMAGTIYTELQRKLIEAISSSSSEERLSEPENC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0713 327 PANTHER TRANSCRIPTION FACTOR 137 320 - -
Ssu7g0713 327 Pfam Helix-loop-helix DNA-binding domain 146 197 IPR011598 GO:0046983
Ssu7g0713 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Ssu7g0713 327 Coils Coil 186 216 - -
Ssu7g0713 327 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 137 320 IPR015660 GO:0003700|GO:0006357
Ssu7g0713 327 CDD bHLH_AtORG2_like 145 217 - -
Ssu7g0713 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 196 IPR011598 GO:0046983
Ssu7g0713 327 Gene3D - 136 217 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0713 Ssu-Chr7 14409647 14415092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0713 142 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.775 7.94e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g0713 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0713 - - gmx:100803786 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0712 7 14388444 14389660 Ssu7g0713 7 14409647 14415092 PCT