Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0712 ATGGCCGAAGAGAATCAGAAGCATATAATATTGGCTACTTCGGACAATGATGAGAAGAAGATCATTCGTAGGGAAGTTGAAAAACAAAGGAGGACACACATGTCTATTCTATGTGCATCTCTCCGGTCTTCACTCCCTTTTGAACTCATCAAGGGAAAGCGTTCGACATCAGATCACATAGGCGAGGCTGTAAATTATATccaaattttaaaggaaaagatTAATGCTCTCCAAGTCAAGAGAGATAGGCTCAAACAGATGGTTAATTCAAGTTCAGTTGAAACGGGAATTGAACCAGATCATTCAGGTGCACTAGTGAAGTGTGTCAACATCAATCCCATTCCAGGGGGCGTGGAAATTTCCATATGTAGTGGTTTCGAGGAGGGCAGTTCATCACCTTTATCAGAGTTGATGGAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCGACCCATGCTAATGGGAGGATATTTCATACTATTAAGTCTGAGGTGGAGGAGTTGACACGCCTTGATCTTGCTAAGCTGCAACTCAAACTGGATCATGCAATCTTGTTGTCAAGGTAA 576 0.4062 MAEENQKHIILATSDNDEKKIIRREVEKQRRTHMSILCASLRSSLPFELIKGKRSTSDHIGEAVNYIQILKEKINALQVKRDRLKQMVNSSSVETGIEPDHSGALVKCVNINPIPGGVEISICSGFEEGSSSPLSELMEILLQEGCDVVSCVSTHANGRIFHTIKSEVEELTRLDLAKLQLKLDHAILLSR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0712 191 Coils Coil 67 87 - -
Ssu7g0712 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
Ssu7g0712 191 Gene3D - 11 95 IPR036638 GO:0046983
Ssu7g0712 191 CDD bHLH_AtORG2_like 19 86 - -
Ssu7g0712 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 88 IPR036638 GO:0046983
Ssu7g0712 191 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 191 - -
Ssu7g0712 191 Pfam Helix-loop-helix DNA-binding domain 23 70 IPR011598 GO:0046983
Ssu7g0712 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 3 191 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0712 Ssu-Chr7 14388444 14389660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0712 24 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 34.884 1.44e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g0712 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0712 - - ccaj:109790384 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0712 7 14388444 14389660 Ssu7g0712 7 14388444 14389660 ECH
Ssu7g0712 7 14388444 14389660 Ssu7g0713 7 14409647 14415092 PCT
Ssu7g0711 7 14338027 14338953 Ssu7g0712 7 14388444 14389660 PCT