Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0711 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGTTCCAGTTTTCTAATGGTCTCCACCAGCAACACAAAATCTCCGAAGATCTGATTCTGGATGATCACGATAATTCTCCCCTTGTCGGTTATACCGATAAAAAATTGCGTAGTAGCCAcccaaagaaattattttatgaggcTGGTACCAGTCACGCTAATTCTAAGGAATATACAAAAAAGATGGTTCACAGAGAGATTGAAAGGCAAAGGAGGCAGGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTTATCCCTCTTGACTTCATCAAGGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTGCAGAAGAATATTAAAGAACTGAGTGACAAGAGGGATGAATTGAAGAAGAAACTCTCCATAAATTCCAGCCTCGAAAGCCATGAGAACAAGCATGCATCTAGCGGTTTCACTGTTCATCAGAATAGTGGAGCTGTGGGGATTGAAATCAGTGGATTCAGTGAGGAAGGGGCTCCACTTTCAAAATTGCTCGAACTACTATTAGAAGAGGGACTTGAAGTTGTTAGTTGTCTTTCAACCCAAGTCAATGGCAGATTACTCCACAGTGTGCAGTGTGAGGTTGACAATTCCGACAGTGTAGATCTACCTGAGCTCAGAAGGAAATTTTCCAATGGAATTCCATCATTTAAGTAA 714 0.4062 MFPLQRGNELVFQFSNGLHQQHKISEDLILDDHDNSPLVGYTDKKLRSSHPKKLFYEAGTSHANSKEYTKKMVHREIERQRRQEMATLHASLRSLIPLDFIKGKRSISDQMNEAVNYINHLQKNIKELSDKRDELKKKLSINSSLESHENKHASSGFTVHQNSGAVGIEISGFSEEGAPLSKLLELLLEEGLEVVSCLSTQVNGRLLHSVQCEVDNSDSVDLPELRRKFSNGIPSFK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0711 237 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 237 - -
Ssu7g0711 237 Coils Coil 111 138 - -
Ssu7g0711 237 CDD bHLH_AtORG2_like 70 146 - -
Ssu7g0711 237 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Ssu7g0711 237 SMART finulus 75 127 IPR011598 GO:0046983
Ssu7g0711 237 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Ssu7g0711 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Ssu7g0711 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 141 IPR036638 GO:0046983
Ssu7g0711 237 Gene3D - 60 150 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0711 Ssu-Chr7 14338027 14338953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0711 70 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 47.337 5.76e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g0711 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0711 - - gmx:100775836 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0711 7 14338027 14338953 Ssu7g0711 7 14338027 14338953 ECH
Ssu7g0711 7 14338027 14338953 Ssu7g0712 7 14388444 14389660 PCT