Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0703 ATGGCGACCAACGACGGGGACGACGAGACTAGTTCCGAGCTCGTCGAACCCGAAGCTTCTAGAGAAGAGGACAATAGccacaagaagaagaaaaagaagaaaaaggccAAGTCCGAGGAGCCCTTGGTAATGgaagcagaagaaaaagaagaagacaagAAGGAGGATCCCAATGCGGTTTCCAAATTCAGGATATCGGAGCCGTTGAGGGAAAAATTGAAGGAGAAGGGAATCGAATCGCTCTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGCAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCCTTAACAAATGGTCCAGCAAAAGCATCGAGAAAGACTGGCTATGGGAGGACTCCAAGCGTTCTTGTGCTTCTACCTACTAGGGAATTGGCTTGTCAGGTGCATACTGATTTTGAAGTTTATGGTGGGGCGATGGGATTGAGCTCTTGTTGTTTATACGGCGGAGCTCCGTATCAAGGTCAAGAGATTAAGCTTAGGAGAGGTGTTGATATTGTAATTGGCACACCAGGTCGTGTGAAGGATCATATAGAGAGGGGAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCTGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAgGTAAGGTAGAAAATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTCTGCCAGACTGGGTTAAGCATATTGCAGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTATCAATGTTAGGCACATTGTTCTTCCTTGTACTGGTTCTGCCAGGGCCCAACTTATCCCAGACATTATTCGCTGTTATAGCAgTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGATGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAAGCACAACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATTCAGtgtgAACCCCCACGGGACGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTATGCTTTATGATCCAAAAAGATCGAATATAtctaaaatagaaagagaatCTGGTGTAAAATTTGAACACATATCTGCCCCTCAACCTGATGATATTGCCAAAGCTGTTGGTGGTGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGAGCTTTTAAACAGTTCTGGTTTATCAGTCGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCAGCTGGTTATACCGAAATTAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTACTTCTTGAGATTGGGACACCAATCTTCACCCCATCTTTTGCCTATGGAGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACGTATCTTACTGGTCAGGAAAATGCCTCGAATGTAAGTTTAGAGGTGTTGAAAGCATTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGCAGATTTGGTGACGGTGGTGGTCGAGGTGGGAACAGGTTTTCAGGTGGAAGAGGTGGAGGAGGCAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGGAGAGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 1929 0.4329 MATNDGDDETSSELVEPEASREEDNSHKKKKKKKKAKSEEPLVMEAEEKEEDKKEDPNAVSKFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRTPSVLVLLPTRELACQVHTDFEVYGGAMGLSSCCLYGGAPYQGQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVSKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASINVRHIVLPCTGSARAQLIPDIIRCYSSGGRTIIFTETKESASQLAGMLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISKIERESGVKFEHISAPQPDDIAKAVGGEAAEMIIQVSDSVVPAFKSAAEELLNSSGLSVVELLAKALAKAAGYTEIKQRSLLTSMENYVTLLLEIGTPIFTPSFAYGVLRRFLPEEKVEAVKGLSLTADGNGVVFDVPAEDLDTYLTGQENASNVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGNRFSGGRGGGGRNGRFSNDRFSNGGGRGRGNWGGKRW 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0703 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 271 IPR014001 -
Ssu7g0703 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 415 IPR027417 -
Ssu7g0703 642 MobiDBLite consensus disorder prediction 590 642 - -
Ssu7g0703 642 Gene3D - 284 508 IPR027417 -
Ssu7g0703 642 Pfam Helicase conserved C-terminal domain 304 403 IPR001650 -
Ssu7g0703 642 SMART ultradead3 77 289 IPR014001 -
Ssu7g0703 642 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 4 620 - -
Ssu7g0703 642 MobiDBLite consensus disorder prediction 37 59 - -
Ssu7g0703 642 Pfam GUCT (NUC152) domain 492 587 IPR012562 GO:0003723|GO:0004386|GO:0005524
Ssu7g0703 642 SUPERFAMILY RNA-binding domain, RBD 496 579 IPR035979 GO:0003676
Ssu7g0703 642 Gene3D - 5 271 IPR027417 -
Ssu7g0703 642 Pfam DEAD/DEAH box helicase 82 259 IPR011545 GO:0003676|GO:0005524
Ssu7g0703 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 442 IPR001650 -
Ssu7g0703 642 CDD GUCT_RH7_like 499 584 - -
Ssu7g0703 642 MobiDBLite consensus disorder prediction 1 59 - -
Ssu7g0703 642 CDD SF2_C_DEAD 286 412 - -
Ssu7g0703 642 CDD DEADc 69 266 - -
Ssu7g0703 642 SMART helicmild6 326 403 IPR001650 -
Ssu7g0703 642 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 215 223 IPR000629 -
Ssu7g0703 642 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 620 - -
Ssu7g0703 642 Gene3D - 509 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0703 Ssu-Chr7 14252559 14256861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0703 95 439 Eukaryotic Initiation Factors Gene Family AT1G72730 30.571 2.41e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0703 K16911 - gmx:100820207 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0703 7 14252559 14256861 Ssu7g0703 7 14252559 14256861 ECH