Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0683 ATGAATCCTCATGGTCGAGTGAAGGAAGAGTTTCTTCGAGAAAGTTCTTCCTTTTGTGGTGGCTATGATCCACAGCAAATAAGGGTTGTTCCTCAACCAATTGAGGCGCTTCATGAAATTGGTCCTCCACCATTCCTCACAAAAACATACGACATAGTTGATGACCCTTCCACAGACCATATTGTTTCCTGGAGCACAGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCCTTTTCCATAACACTTCTCCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAAGTGGATCCAGATAGGTGGGAGTTTGCTAATGAGATGTTTCTTAAAGGGCAAAGGGTTCTTTTGAAGAACATTAGAAGGAGGAAAGCAAATCATCAATCTCATGCGATGCAGCAAGGTGTAGAGCCTTGTGTTGAGGTGGGGCAGTTTGGATTAGATGGAGAAGTTGATCGGTTGAGGCGTGACAGGCAAGTTCTAACGGTGGAGTTGGTGAAACTTAGACAACAGCAACAGAATACCAGAGCTCACCTTCAAGCAATGGAAGGAAGGCTTAAAAGGACTGAACAGAAGCAACAACAAATGATGAATTTCTTGGCCAGGGCAATGCATAATCCCAACTTCGTGCAACAATTGGTTCAGCAAAAGGAGTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGAAGGCCTATTGATCAAGGGCCTAGTAATGTTGCTGTAGTGGGTGAGTTAGGTTGCGCTGAGGAGTGTTCAACTTTCGTCAAACTTGAGCCGCAGGAACACACTGACAAGGTATTAGAGTTTGAGGTACCTGACCTGGACCTTCCTTTGAATCTCGAGGAGAATATTGGAAGCCAAAAGAGATGGAGGAAGATCTTATTCAACTTGAAAGTAGAGATACGGATATTGATGAAGTGTTTTGGCAAGATTTGCTTGATGAGGGTATTAATGAACATCAAGGTGCACTAG 1014 0.4398 MNPHGRVKEEFLRESSSFCGGYDPQQIRVVPQPIEALHEIGPPPFLTKTYDIVDDPSTDHIVSWSTGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLKGQRVLLKNIRRRKANHQSHAMQQGVEPCVEVGQFGLDGEVDRLRRDRQVLTVELVKLRQQQQNTRAHLQAMEGRLKRTEQKQQQMMNFLARAMHNPNFVQQLVQQKEWRKELEEAFSKKRRRPIDQGPSNVAVVGELGCAEECSTFVKLEPQEHTDKVLEFEVPDLDLPLNLEENIGSQKRWRKILFNLKVEIRILMKCFGKICLMRVLMNIKVH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0683 337 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 8 295 - -
Ssu7g0683 337 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0683 337 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0683 337 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0683 337 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0683 337 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Ssu7g0683 337 Coils Coil 162 203 - -
Ssu7g0683 337 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0683 337 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 295 IPR027725 -
Ssu7g0683 337 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu7g0683 337 Gene3D - 38 135 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0683 Ssu-Chr7 13849690 13851290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0683 23 312 HSF AT3G22830 57.895 1.38e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu7g0683 HSF_DNA-bind 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0683 K09419 - gmx:100809515 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3037 2 91981855 91984615 Ssu7g0683 7 13849690 13851290 PCT