Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0682 ATGACAGCTGGCCTGTTTCatggaaaaaaagagagttccAAACAGTTGTTGAGATTGCAATTTGCAACTGCACTCCTTTTCCTTCCCCAAAACAAGCTAGAGCCCATTGTGCACCGAGACCTTAAACCATCTAACATTCTCTTGGACAGGAATTATGTGAGTAAAATCAGTGATGTCGGTCTGGCACGGTTAGTCCCTCTTTCTGTAATTGATACTGCGACACAATATTCAATGACTTCAGCTACCGAAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGAATACTATCAACAAAGTTAGATATATATTCATTAGGGATAAAAACCTaa 336 0.372 MTAGLFHGKKESSKQLLRLQFATALLFLPQNKLEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPLSVIDTATQYSMTSATETFCYIDPEYQQTGILSTKLDIYSLGIKT 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0682 111 Pfam Protein kinase domain 17 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0682 111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 36 48 IPR008271 GO:0004672|GO:0006468
Ssu7g0682 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0682 111 Gene3D Transferase(Phosphotransferase) domain 1 4 110 - -
Ssu7g0682 111 PANTHER BNAA05G18880D PROTEIN 20 109 - -
Ssu7g0682 111 PANTHER OS02G0152300 PROTEIN 20 109 - -
Ssu7g0682 111 SUPERFAMILY Protein kinase-like (PK-like) 15 109 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0682 Ssu-Chr7 13837842 13838177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0682 20 109 Receptor kinase-like Gene Family AT5G12000 77.778 6.11e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu7g0682 Pkinase 4.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0682 - - gmx:100798861 152.91