Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0673 ATGGGGAGGACAGGCAAATGGCTTAGAAACTTGTTGACAGGTAAGAAAGACaaggaaaaggagaaggaaaaatCTACAACCAACCTGAATTCTTCTTCAGATGGAACAGAAAATTCAACCACTCCAATTTCCACAACCCCAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCCTCAGCTACTGCCACTGCCACTGCCACACCAACAACAACTTCCAAGGAATTGAGTTTTGTAGAATCAAATGTCACTGCTTCACAGACAGTGCAAACTGACACTGATATTAAGAATGAGCAGAGGAAGCATGCCATGGCTGTGGCTGCTGCCACTGCAGCAGCAGCTGATGCTGCAGTTGCAGCTGCTCAGGCTGTAGCTGTTGTGATCCGTTTGACTTCTGCTTCCAATGGAACATCTAAAAGTATTGAAGAAGCTGCTGCCATTAAAATCCAATCAGTCTTTCGCTCTCACTtgGCAAGGAAAGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAAGCACTAGTAAGGGGTCGCTTGGTGAGAAAACAGGCCAAGGCAACATTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTGCTCGGAGGGTCCAAATGGTGTCAGAAGGAAAGCCTAATCAAAAGCAATCAACGCACAGAAATGCCATAGAGGATGATTTTTTCAGGCATATATATAATGAAATGGACAGAAGTTTGGAAGATAACATCAAGATTGTAGAGATGGATGTTTGTGAATCAAAAGGTAACTCCAGAAGCAGAAGCAGCAGTGTATGTCATCATGGACATCACGAGCAATCTGACCATAGGTTTTCCAcacatttttcaacaaatggTTCCTACTCAAAGGAAGAGTACTACAAGGTATCACCAGCTCCATCAGCTTTGACAGAGTTGAGTCCAAGAGCTTGCAGTGGTCATTTTGAGGACTGTTTCAGCACAGCACAAAGCAGCCCCCAGTTCTACTCTGCTGTGTCAAGAACAGACAATTCAAAGCACCCTTTTGGTTTCCCTAGGCCAGCTTATGCAGAATCTGTGTCCTATGACTACCCTTTGTTCCCAAATTACATGGCTAACACTGAATCATCAAGGGCCAAAGTCAGATCACATAGTGCACCAAAACAAAGACCAGATTCATTTGAGAGGCAACCAAGCCGGCGAAGAGTTTCAGTGGAAGGAAGAAATGTCCCAAGGCCAATGAGGATGCAAAGGTCATCTTCACATGTGGGTGCCACTGCCCATAATTACCAATATCCTTGGTCAATCAAGCTTGATAGATCCACAGTTTCACTCAAAGACAGCGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTTATTATTCCGGATCTCTTGTTGGATATGACCCACGTGGAGATAGGTACTGA 1416 0.4357 MGRTGKWLRNLLTGKKDKEKEKEKSTTNLNSSSDGTENSTTPISTTPKEKKRWSFRRSSASATATATATPTTTSKELSFVESNVTASQTVQTDTDIKNEQRKHAMAVAAATAAAADAAVAAAQAVAVVIRLTSASNGTSKSIEEAAAIKIQSVFRSHLARKALCALRGLVKLQALVRGRLVRKQAKATLRCMQALVTAQARARARRVQMVSEGKPNQKQSTHRNAIEDDFFRHIYNEMDRSLEDNIKIVEMDVCESKGNSRSRSSSVCHHGHHEQSDHRFSTHFSTNGSYSKEEYYKVSPAPSALTELSPRACSGHFEDCFSTAQSSPQFYSAVSRTDNSKHPFGFPRPAYAESVSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRVSVEGRNVPRPMRMQRSSSHVGATAHNYQYPWSIKLDRSTVSLKDSECGSTSTVLTNTYYSGSLVGYDPRGDRY 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0673 471 MobiDBLite consensus disorder prediction 376 403 - -
Ssu7g0673 471 MobiDBLite consensus disorder prediction 10 27 - -
Ssu7g0673 471 MobiDBLite consensus disorder prediction 1 74 - -
Ssu7g0673 471 MobiDBLite consensus disorder prediction 371 418 - -
Ssu7g0673 471 ProSiteProfiles IQ motif profile. 167 194 IPR000048 GO:0005515
Ssu7g0673 471 ProSiteProfiles IQ motif profile. 143 171 IPR000048 GO:0005515
Ssu7g0673 471 Gene3D - 142 196 - -
Ssu7g0673 471 MobiDBLite consensus disorder prediction 57 74 - -
Ssu7g0673 471 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 448 - -
Ssu7g0673 471 MobiDBLite consensus disorder prediction 260 284 - -
Ssu7g0673 471 PANTHER IQ-DOMAIN 5-RELATED 1 448 - -
Ssu7g0673 471 Pfam IQ calmodulin-binding motif 145 163 IPR000048 GO:0005515
Ssu7g0673 471 Pfam IQ calmodulin-binding motif 170 186 IPR000048 GO:0005515
Ssu7g0673 471 Pfam Protein of unknown function (DUF4005) 340 403 IPR025064 -
Ssu7g0673 471 SMART iq_5 165 186 IPR000048 GO:0005515
Ssu7g0673 471 SMART iq_5 142 164 IPR000048 GO:0005515
Ssu7g0673 471 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0673 Ssu-Chr7 13663794 13665803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0673 1 466 IQD Protein Family AT4G14750 44.124 1.01e-101 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0673 - - gmx:100817667 733.021