Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0672 ATGGCCTCTCATTCTCCCAAAAGAGGAGAAGGCCCTTATCTTATTGTACTATTCCGGGTCTCCCTTCTTGCCATTCTCATCTCCATCATCAAGCCCTCACACCAATCTGAACACTATTCCCCTCTCCCCCCTCTAAACCCAAGGCTAGCCAAAGCCTACACTGCCCTCCAAGCATGGAAACACTCCATCACCTCAGACCCCAAAAACTTCACCTCCAATTGGTGTGGCCCCCATGTTTGCAACTACACTGGCGTATACTGTGCACCAGCCCCAGATGACCCTCACATCTACACAGTCGCTGGAGTAGACCTAAACCATGGCACCATATCAGGTTCATTGCCTGAGGAACTTGGCCTCTTAACCGACCTAGCCCTTTTCCACATAAACTCCAACCGCTTCTGTGGCTCCCTCCCCAACAGCTTCAACCAACTCCACCTCCTCCATGAACTAGACATCAGCAACAACAAATTCTCAGGACCATTCCCCGAGGTTGTTCTTTGCATCCCTAAACTCAAATTCTTGGATATCAGATTCAATAAGTTCCACGGCCAAGTTCCCTCGCGAGTCTTTGACCTCAAACTCGATGCCCttttcatcaacaacaacaacttccAATTCTCCCTGCCTGAAAACTTCGGGAACAGTCCTGCTTCTGTGGTTGTGTTTGCAAACAACAACCTCAAGGGTTGTCTTCCTTCGAGTTTGGCCAAAATGAAGGGTACCCTTAACGAGATTATCATCATGAATAGTGGCTTAACGGGTTGTTTGCCACCGGAGATAGGGGATTTGGACAAAGTGACAGTGTTTGATGTGAGCTTCAACAAACTGGTTGGAGAATTGCCTGAGTCCTTGGGAAGAATGAAGAGGTTGGAGCAGCTGAATGTGGCACATAACATGTTGTCTGGCACCGTTCCTGAGAGCATTTGCATGTTGCCGAGGTTGGAGAACTTCACGTACTCGTACAACTACTTCTGCAGTGAGTCACCAGTGTGTCTCAAGTTGAAGGATAAGAATGATAAGAAGAATTGTATTCCTTATAAGCCATTGCAAAGGCCACCTGAGGAGTGTGCAGCTTTTTATGCACATCCTGTTCATTGTAGTGCCTTTGGTTGCGTATCGCCTCCACCTCCGCCGccacccccaccaccaccaccgcctcCGTCGCCGCCACCTCCACCGCCACCGCCGCCACCTCCTCCGCCGCccccacctccaccaccaccaccgcctcCGCCGCCacctcctccaccaccacctccgCTGCCGCCACCGGCCACTTACTACCACTATCCCTGA 1296 0.4653 MASHSPKRGEGPYLIVLFRVSLLAILISIIKPSHQSEHYSPLPPLNPRLAKAYTALQAWKHSITSDPKNFTSNWCGPHVCNYTGVYCAPAPDDPHIYTVAGVDLNHGTISGSLPEELGLLTDLALFHINSNRFCGSLPNSFNQLHLLHELDISNNKFSGPFPEVVLCIPKLKFLDIRFNKFHGQVPSRVFDLKLDALFINNNNFQFSLPENFGNSPASVVVFANNNLKGCLPSSLAKMKGTLNEIIIMNSGLTGCLPPEIGDLDKVTVFDVSFNKLVGELPESLGRMKRLEQLNVAHNMLSGTVPESICMLPRLENFTYSYNYFCSESPVCLKLKDKNDKKNCIPYKPLQRPPEECAAFYAHPVHCSAFGCVSPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLPPPATYYHYP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0672 431 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 378 - -
Ssu7g0672 431 PRINTS Proline rich extensin signature 374 386 - -
Ssu7g0672 431 PRINTS Proline rich extensin signature 386 407 - -
Ssu7g0672 431 PRINTS Proline rich extensin signature 407 423 - -
Ssu7g0672 431 SUPERFAMILY L domain-like 51 331 - -
Ssu7g0672 431 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 20 378 - -
Ssu7g0672 431 Gene3D Ribonuclease Inhibitor 51 216 IPR032675 -
Ssu7g0672 431 MobiDBLite consensus disorder prediction 375 418 - -
Ssu7g0672 431 Pfam Leucine rich repeat N-terminal domain 53 87 IPR013210 -
Ssu7g0672 431 Gene3D Ribonuclease Inhibitor 217 342 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0672 Ssu-Chr7 13656641 13657936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0672 42 379 Leucine-rich Repeat extension Gene Families AT3G22800 66.765 1.38e-162 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0672 - - gmx:100813811 651.358