Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0671 ATGTGCAGATCTGATCCCTTTGCCAAGAAGGATTGGTACGACATTAAGGCTCCTTCTATTTTCCAAGTAAAAAATGTTGGCAAAACCCTCGTCACTCGTACTCAGGGTACCAAGATTGCTTCAGAAGGACTTAAACATAGAGTGTTTGAAGTCTCGTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAATTTCTGGGGAATGGATTTCGCAACTGACAAGCTGAGGTCATTGGTGAGAAGATGGCAAACTCTAATTGAAGCCCATGTGGATGTGAAGACAACTGATAATTACACATTGAGGATGTTCTGCATTGGATTTACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTACGCACAATCAAGCCAGATTAGACAGATTCGTAGGAAAATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGATTTGAAGGAGTTGGTCCGCAAGTTTATTCCTGAGATTATTggaaaagagatagaaaaggCAACATCCAGTATTTACCCTCTGCAGAATGTGTTTGTTCGAAAAGTCAAGATCCTTAAAGCTCCAAAGTTTGATCTTGGGAAACTAATggagGTTCATGGGGATTACTCAGAAGATGTTGGTACCAAGGTAGACAGACCTGCCGATGAAACAGTGGTAGAGGGAACCACCGAAATTGTTGGAGCTTGA 735 0.415 MCRSDPFAKKDWYDIKAPSIFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGRNVLTNFWGMDFATDKLRSLVRRWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETVVEGTTEIVGA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0671 244 ProSitePatterns Ribosomal protein S3Ae signature. 44 56 IPR018281 GO:0003735|GO:0005840|GO:0006412
Ssu7g0671 244 SMART Ribosomal_S3Ae_2 3 204 IPR001593 GO:0003735|GO:0005840|GO:0006412
Ssu7g0671 244 Pfam Ribosomal S3Ae family 4 204 IPR001593 GO:0003735|GO:0005840|GO:0006412
Ssu7g0671 244 Hamap 40S ribosomal protein S1 [RPS3A]. 1 241 IPR027500 GO:0003735|GO:0005840|GO:0006412
Ssu7g0671 244 PANTHER 40S RIBOSOMAL PROTEIN S3A 4 244 - -
Ssu7g0671 244 PANTHER 40S RIBOSOMAL PROTEIN S3A 4 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0671 Ssu-Chr7 13648753 13650886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0671 5 244 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 85.477 3.05e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0671 K02984 - gmx:100813273 461.84