Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0668 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCCCAATTCGAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAGTCTGTTCACATTACTCAGACATTCAACTCGCTTAGCTTTTCATCCCCTCCATCTGTTTTCACATCGCCCCATGTCAACTGTCACAAGGAATCCAGATTCCTCAGGAGgcATAACCTTTTGGACACATCCAAACCTAAGGTTTCGTCTGAAGATGTAAATAATGCTTATTCATGTGAAGAGACTCCTGCAGATTCAACTCATGCTTGTCATGAATCAAGTGAGCTACAGGAAAAAGCTGAGGAAAATATTCCCATAGGAGATGCCTCAATTGAGCCATGTAACGAAAACCCAAATATCTCAATTGAGCTTCCACAAGTCTTGAAATATAATTTGGGTAGTCCAGGGTATGATCCTCTACTCTGTGGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGCCAGCCAGCATCAGATGTTGCCTATGTTCCAGAAGGCTcggaaaaagattcaattgagggTGAAATGCATCTTCCAGGATTATGTCAGATTGAGGCAAAAAATGAAGGCCCAGATTGTGGTGTGGATGGTTTAATTACTGAGGCCTCTGATCTGTTAATGTTTAGCTCCCCCAATGTGACAGAAGCTTTTAAGGTTGTTTCTGGTTCAGAACATGAAATTGAAGACCATCCTTCTGAATCAGCAGCAGCCACAGACACAGGTCAGAGACAGGACAATCTTGCCAATGTTGCTTTGATGGTTAGCAATCCAAGTGAGAAAATGGATGATAAGCTTGTTTATCTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAGATAGCCAATGTACAAAGGAAGAACTCAGATGATAATTCAAACACCAATTCCAGTACAGCAAAATCTGATGAGAGGAATGTTGGTAATGAAAAGCAACTGCTTCCTACAAAACACATTGGGGATTCACGGAGGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCACTTGCAAATTTAAAGGAttgcaaaaacataaaaattgaaaagttatcATCTGGAAGGCAACCTAATCTGCCCAGCTCTCCTTCATCCTTGCAACTCTCTGCAAGCCAAGAACATCAACTATTGTTGGTACCTGCATCAGCGGAAAGAGATTTGGAGCCATCAGAGAATGAGGTTCAGCCTGGTGAAGATTGTACTCAGTCATTGGTTCACATGGCTGGTGAAGATCTCCAGCAGAATAGCccgaaaaagaaaaggaaagtacCGCGCAAGTTGGAACCAGCTGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTttATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGTTCATGTCGCGATTGCTTCAACAAGCCTATTCATGTGGATACTGTTCTTCAAACTCGTCAGCAGATCGAGTCCCGTAACCCACTTGCATTTGCTCCTAAAGTCATAAGAAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCACGACACAAGAGGGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGTAGATGTGAAGGATGCAAGAACACATATGGTAGAAATGATGGTTCTGTTCCTGAAGCTGAGCCCGAAGAACAAACAGAAGCGTGTGAGAAGGGTGTGGTGGAAAATGCTTCACAGAAAACtgaaactcagaatattgaagaCCATCCAGATCGTGCTCTTCCTTCAACACCATTACGGCTTTCCAGACCATTGCTCCCATTACCCTTTTCATCAAAGGGCAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTTGGGAAATCAAATGCTCTGCGGTCTGAACCTAAACTTGAAAAGCCTCTGCAAACTGTTCCAGATGATGACTCGCCTGTCACCTGCATCAAAACTTCTTCTCCCAATGGCAAGAGGATCTCCTCTCCTAATTGTGAAGTTGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATATTACAATCTATCCCTTCATTTCCTTCTCTCACCCCTCACCATTAG 2199 0.4179 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHKESRFLRRHNLLDTSKPKVSSEDVNNAYSCEETPADSTHACHESSELQEKAEENIPIGDASIEPCNENPNISIELPQVLKYNLGSPGYDPLLCGDEANSLLELPGQPASDVAYVPEGSEKDSIEGEMHLPGLCQIEAKNEGPDCGVDGLITEASDLLMFSSPNVTEAFKVVSGSEHEIEDHPSESAAATDTGQRQDNLANVALMVSNPSEKMDDKLVYLTHRGIRRRCLDFEIANVQRKNSDDNSNTNSSTAKSDERNVGNEKQLLPTKHIGDSRRCVLPGIGLHLNALANLKDCKNIKIEKLSSGRQPNLPSSPSSLQLSASQEHQLLLVPASAERDLEPSENEVQPGEDCTQSLVHMAGEDLQQNSPKKKRKVPRKLEPAGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRNDGSVPEAEPEEQTEACEKGVVENASQKTETQNIEDHPDRALPSTPLRLSRPLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSNALRSEPKLEKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCEVGSSPTRRGGRKLILQSIPSFPSLTPHH 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0668 732 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 732 IPR044522 GO:0003700
Ssu7g0668 732 MobiDBLite consensus disorder prediction 423 446 - -
Ssu7g0668 732 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 538 573 IPR005172 -
Ssu7g0668 732 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 452 487 IPR005172 -
Ssu7g0668 732 ProSiteProfiles CRC domain profile. 450 575 IPR005172 -
Ssu7g0668 732 MobiDBLite consensus disorder prediction 302 331 - -
Ssu7g0668 732 MobiDBLite consensus disorder prediction 662 732 - -
Ssu7g0668 732 MobiDBLite consensus disorder prediction 600 626 - -
Ssu7g0668 732 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 732 - -
Ssu7g0668 732 MobiDBLite consensus disorder prediction 237 257 - -
Ssu7g0668 732 MobiDBLite consensus disorder prediction 302 318 - -
Ssu7g0668 732 MobiDBLite consensus disorder prediction 683 707 - -
Ssu7g0668 732 SMART CXC_2 449 490 IPR033467 -
Ssu7g0668 732 SMART CXC_2 535 576 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0668 Ssu-Chr7 13622822 13627984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0668 16 732 CPP Transcription Factor Family AT4G14770 45.565 1.40e-162 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ssu7g0668 TCR 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0668 - - gmx:100811662 1198.34