LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g0642	atgattgaaaatgcTGTCACCAGTGGTAGTTCAAAAGGCCAGAATGCTACCCATCACTTAAATGATGGAACTGAAAAATCATTTTCTGGAAATGACCCTCATCATGGAGGGAAAAGTAGAAAACAAGGAAGGTGCACTTTATTAATTCGTAGTTCTAACAAGGGATCGAATTCAGAATCTGATGACTTCGTTCCATACGCGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCGGGGGTAGTACAGTTAAGCCAAAAGGTTCAGTACCGTAGAAGAAAACGAGTACTACTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCACGCGGGAAGCAAATTGCCCCAGCCATATCAAAGCATGTATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGGATAAACAAGAAAATTCTAAGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCTTCAACATTTCATCAGAGTTGCTTAGATATACAGATGCTTCCCCCTGGTGAATGGCATTGTCCTAATTGCACCTGTAAATTTTGTGGATTAGCCAGTGGCACTATTGACACAGAAGATGATGCAATTGTACATGCCCTGCATACTTGTTACTTGTGCCAGAAAAACTACCATGACTGTTGTGCCAAGGGTATGGGTGCCTTTTCAACTGATTCCAATATGGCAGGGGCTTCCTTTTGTGGAAAAAGTTGCAAAGAGCTTTTTGAGCACTTGAAGAAATACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTCTCTTATTCACAGAACAGATGAGGACTCAGAGGCAGCTAGTAGGGGAATTACTCAGAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGATGAATGTTTTTTACCTGTTGTTGATCGAAGGAGTGGGATCAATTTAATccataatgttttatttaatagtgGGTCAAACTTCAGTCGATTGAATTATAGTGGCTTTTATACTGCTATTTTAGAAAGAGGGGATGAAATAATATCTGCAGCATCCATCAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATGTATAGGCACCAGGGAATGTGCCGCCGGCTTTTTTCTGCTGTTGAGTTGGCTCTTTGCTCTCTGAAGGTTGAGAAATTGGTTATTCCTGCAATTTCTGATCTCATTGATACGTGGACAAAAGTTTTTGGGTTCACACGTGTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGCTTGTGGAGCAAGGAAAACTTGAGGGTGctgataaaattgaaaatggagaTGAGGTTTCAATTAAGCCCAATATGGCTAATAGGTTAGATATGGATTCCTCAGCTCTGCAAGATCCTCATGGAAGTGATGATACTAGTTCAAATCGTCCCAATGAGATGAACAATGAATGTAGTGATGCTTCTCAAGAACTGAACAATCAAGGTTTGGTTGGCATGACTTTATGCTCCAAATCTCATTCTGAGGAAGGATCATCTGATTCCTTTTCAGACAATTGTGTTTCTCCTTCTAGTATTAGTCATGGAGTAAtcggaaagaaaaataaaatagtgaaggCTTCTCCTGTTGATGATAAATTACATCATTCTCCCAAATGTCAACTAATTTCACCAAATGACATTTCTACTACTAGTCTTCCATCTGATGCTCCAGATTGCCATGAAATTCCTGTTTTGGGTCAGGAAACTGCTTGTTCTGACCCTGATTCTGCAGAAGACATGGGTGTACCTGTTTCTGACAACAGGAAACACCATGCTTTCACTGATAATGCTTTGCCTTCTAAAGAGGTTGATATGAATGATGTCATTGATGAGGATCTTGAAGTTGGTCCTTCAGTGAATTTATCTCAAGAGAATATTACTGAGGAGAATAATGAAAATGTTGATGTCTCTGGTTCTGTTCTTAATCATGCTGGTGAGAGTTCTTTGCGGTTAAGATCTGATTTGAATGGTGAAATTGCATATGTGGGAGAAAAGAGTTTACAGACTGACAAAGAAGTTGCTTCAAATGAAATCCATTTTGATGAAACTGGCCTAAATGCTTCTGGTCATAGTTCTGAAACTGATCCAGTATAG	2283	0.392	MIENAVTSGSSKGQNATHHLNDGTEKSFSGNDPHHGGKSRKQGRCTLLIRSSNKGSNSESDDFVPYAGKRTVLSWLVDSGVVQLSQKVQYRRRKRVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQSMYLDSGVSLLQCQIDAWDKQENSKKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGLASGTIDTEDDAIVHALHTCYLCQKNYHDCCAKGMGAFSTDSNMAGASFCGKSCKELFEHLKKYLGTKHELDAGFTWSLIHRTDEDSEAASRGITQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNVLFNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHMYRHQGMCRRLFSAVELALCSLKVEKLVIPAISDLIDTWTKVFGFTRVEESLRQEMRSLNMLVFPGIDMLQKLLVEQGKLEGADKIENGDEVSIKPNMANRLDMDSSALQDPHGSDDTSSNRPNEMNNECSDASQELNNQGLVGMTLCSKSHSEEGSSDSFSDNCVSPSSISHGVIGKKNKIVKASPVDDKLHHSPKCQLISPNDISTTSLPSDAPDCHEIPVLGQETACSDPDSAEDMGVPVSDNRKHHAFTDNALPSKEVDMNDVIDEDLEVGPSVNLSQENITEENNENVDVSGSVLNHAGESSLRLRSDLNGEIAYVGEKSLQTDKEVASNEIHFDETGLNASGHSSETDPV	760

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g0642	760	ProSiteProfiles	Zinc finger PHD-type profile.	175	220	IPR019787	-
	Ssu7g0642	760	PANTHER	PHD FINGER FAMILY PROTEIN	12	739	-	-
	Ssu7g0642	760	Pfam	PHD-finger	178	220	IPR019787	-
	Ssu7g0642	760	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	166	282	IPR013083	-
	Ssu7g0642	760	MobiDBLite	consensus disorder prediction	1	45	-	-
	Ssu7g0642	760	MobiDBLite	consensus disorder prediction	508	536	-	-
	Ssu7g0642	760	Pfam	Tify domain binding domain	100	150	IPR032308	-
	Ssu7g0642	760	SMART	PHD_3	177	218	IPR001965	-
	Ssu7g0642	760	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	368	455	IPR016181	-
	Ssu7g0642	760	PANTHER	ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN	12	739	-	-

Showing 1 to 10 of 15 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g0642	Ssu-Chr7	13061148	13065969	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g0642	10	516	PHD Transcription Factor Family	AT4G14920	59.574	0.0	639

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Ssu7g0642		TDBD	6.6e-21	No_clan

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g0642	-		-	mtr:MTR_1g103830	1066.99

Showing 1 to 1 of 1 entries