Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0642 atgattgaaaatgcTGTCACCAGTGGTAGTTCAAAAGGCCAGAATGCTACCCATCACTTAAATGATGGAACTGAAAAATCATTTTCTGGAAATGACCCTCATCATGGAGGGAAAAGTAGAAAACAAGGAAGGTGCACTTTATTAATTCGTAGTTCTAACAAGGGATCGAATTCAGAATCTGATGACTTCGTTCCATACGCGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCGGGGGTAGTACAGTTAAGCCAAAAGGTTCAGTACCGTAGAAGAAAACGAGTACTACTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCACGCGGGAAGCAAATTGCCCCAGCCATATCAAAGCATGTATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGGATAAACAAGAAAATTCTAAGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCTTCAACATTTCATCAGAGTTGCTTAGATATACAGATGCTTCCCCCTGGTGAATGGCATTGTCCTAATTGCACCTGTAAATTTTGTGGATTAGCCAGTGGCACTATTGACACAGAAGATGATGCAATTGTACATGCCCTGCATACTTGTTACTTGTGCCAGAAAAACTACCATGACTGTTGTGCCAAGGGTATGGGTGCCTTTTCAACTGATTCCAATATGGCAGGGGCTTCCTTTTGTGGAAAAAGTTGCAAAGAGCTTTTTGAGCACTTGAAGAAATACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTCTCTTATTCACAGAACAGATGAGGACTCAGAGGCAGCTAGTAGGGGAATTACTCAGAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGATGAATGTTTTTTACCTGTTGTTGATCGAAGGAGTGGGATCAATTTAATccataatgttttatttaatagtgGGTCAAACTTCAGTCGATTGAATTATAGTGGCTTTTATACTGCTATTTTAGAAAGAGGGGATGAAATAATATCTGCAGCATCCATCAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATGTATAGGCACCAGGGAATGTGCCGCCGGCTTTTTTCTGCTGTTGAGTTGGCTCTTTGCTCTCTGAAGGTTGAGAAATTGGTTATTCCTGCAATTTCTGATCTCATTGATACGTGGACAAAAGTTTTTGGGTTCACACGTGTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGCTTGTGGAGCAAGGAAAACTTGAGGGTGctgataaaattgaaaatggagaTGAGGTTTCAATTAAGCCCAATATGGCTAATAGGTTAGATATGGATTCCTCAGCTCTGCAAGATCCTCATGGAAGTGATGATACTAGTTCAAATCGTCCCAATGAGATGAACAATGAATGTAGTGATGCTTCTCAAGAACTGAACAATCAAGGTTTGGTTGGCATGACTTTATGCTCCAAATCTCATTCTGAGGAAGGATCATCTGATTCCTTTTCAGACAATTGTGTTTCTCCTTCTAGTATTAGTCATGGAGTAAtcggaaagaaaaataaaatagtgaaggCTTCTCCTGTTGATGATAAATTACATCATTCTCCCAAATGTCAACTAATTTCACCAAATGACATTTCTACTACTAGTCTTCCATCTGATGCTCCAGATTGCCATGAAATTCCTGTTTTGGGTCAGGAAACTGCTTGTTCTGACCCTGATTCTGCAGAAGACATGGGTGTACCTGTTTCTGACAACAGGAAACACCATGCTTTCACTGATAATGCTTTGCCTTCTAAAGAGGTTGATATGAATGATGTCATTGATGAGGATCTTGAAGTTGGTCCTTCAGTGAATTTATCTCAAGAGAATATTACTGAGGAGAATAATGAAAATGTTGATGTCTCTGGTTCTGTTCTTAATCATGCTGGTGAGAGTTCTTTGCGGTTAAGATCTGATTTGAATGGTGAAATTGCATATGTGGGAGAAAAGAGTTTACAGACTGACAAAGAAGTTGCTTCAAATGAAATCCATTTTGATGAAACTGGCCTAAATGCTTCTGGTCATAGTTCTGAAACTGATCCAGTATAG 2283 0.392 MIENAVTSGSSKGQNATHHLNDGTEKSFSGNDPHHGGKSRKQGRCTLLIRSSNKGSNSESDDFVPYAGKRTVLSWLVDSGVVQLSQKVQYRRRKRVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQSMYLDSGVSLLQCQIDAWDKQENSKKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGLASGTIDTEDDAIVHALHTCYLCQKNYHDCCAKGMGAFSTDSNMAGASFCGKSCKELFEHLKKYLGTKHELDAGFTWSLIHRTDEDSEAASRGITQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNVLFNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHMYRHQGMCRRLFSAVELALCSLKVEKLVIPAISDLIDTWTKVFGFTRVEESLRQEMRSLNMLVFPGIDMLQKLLVEQGKLEGADKIENGDEVSIKPNMANRLDMDSSALQDPHGSDDTSSNRPNEMNNECSDASQELNNQGLVGMTLCSKSHSEEGSSDSFSDNCVSPSSISHGVIGKKNKIVKASPVDDKLHHSPKCQLISPNDISTTSLPSDAPDCHEIPVLGQETACSDPDSAEDMGVPVSDNRKHHAFTDNALPSKEVDMNDVIDEDLEVGPSVNLSQENITEENNENVDVSGSVLNHAGESSLRLRSDLNGEIAYVGEKSLQTDKEVASNEIHFDETGLNASGHSSETDPV 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0642 760 ProSiteProfiles Zinc finger PHD-type profile. 175 220 IPR019787 -
Ssu7g0642 760 PANTHER PHD FINGER FAMILY PROTEIN 12 739 - -
Ssu7g0642 760 Pfam PHD-finger 178 220 IPR019787 -
Ssu7g0642 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 282 IPR013083 -
Ssu7g0642 760 MobiDBLite consensus disorder prediction 1 45 - -
Ssu7g0642 760 MobiDBLite consensus disorder prediction 508 536 - -
Ssu7g0642 760 Pfam Tify domain binding domain 100 150 IPR032308 -
Ssu7g0642 760 SMART PHD_3 177 218 IPR001965 -
Ssu7g0642 760 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 368 455 IPR016181 -
Ssu7g0642 760 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 12 739 - -
Ssu7g0642 760 SUPERFAMILY FYVE/PHD zinc finger 167 223 IPR011011 -
Ssu7g0642 760 MobiDBLite consensus disorder prediction 1 27 - -
Ssu7g0642 760 MobiDBLite consensus disorder prediction 515 536 - -
Ssu7g0642 760 CDD PHD2_CHD_II 178 217 - -
Ssu7g0642 760 ProSitePatterns Zinc finger PHD-type signature. 178 217 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0642 Ssu-Chr7 13061148 13065969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0642 10 516 PHD Transcription Factor Family AT4G14920 59.574 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu7g0642 TDBD 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0642 - - mtr:MTR_1g103830 1066.99