Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0612 ATGGACGTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGAGGAAGGGCCAGAAGCGGAAGCTCGACGAGGAACAGCACGAGGAGCGGCAGATCTCGGGGGCGCCGCCCACTGCCGACGAGCGTGCAGCGCTTCTCTCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACCGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAACGAGGAAGTGGTGAACGTGATTGTTGAAGGATGCGCAATTCCGGCTTTGGCGAAGCATCTTCAGGCGCCGCCTCTGAGTGACCGTGTCCAGAAGCCATTGCCGTTCGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTTCTTGCCGTCAagCCAGAACATCAACAACTCATTGTTGACAGTGGCGTCTTAACACATCTTGTTGATCTTTTAAAGAGGCACAAGAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACCAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTCGCCGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCTCTGCGAACCCTGGcttttaaaaatgatgaaaataaaaatcagATTGTTGAATGCGATGCTCTTCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTTCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCGGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTGCAGAGAGGTGCTGTCCGGCCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCGTTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTACAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGAgtGCTAAACCATTTGTTATATCTTATGCGAGTTTCTGAAAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCAGCAGATGATCAGAGAAAAATTTTCATTGATCACTATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCGAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGACCCTGTCTCCTGTGGATGCTGCTCCGCCTTCTCCAACCCCACAGGTCTATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGGTACAGGGTGAGTTTATATTGA 1734 0.4677 MDVQRRQDQSLSQRKGQKRKLDEEQHEERQISGAPPTADERAALLSDVAEQVSILESTFTWNEADRSAAKRATHALADLAKNEEVVNVIVEGCAIPALAKHLQAPPLSDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGVLTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECDALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYRVSLY 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0612 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Ssu7g0612 577 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Ssu7g0612 577 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Ssu7g0612 577 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Ssu7g0612 577 Pfam BTB/POZ domain 532 571 IPR000210 GO:0005515
Ssu7g0612 577 MobiDBLite consensus disorder prediction 1 38 - -
Ssu7g0612 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Ssu7g0612 577 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 4 573 - -
Ssu7g0612 577 SUPERFAMILY ARM repeat 65 494 IPR016024 -
Ssu7g0612 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Ssu7g0612 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Ssu7g0612 577 Gene3D - 38 206 IPR011989 -
Ssu7g0612 577 Gene3D Potassium Channel Kv1.1; Chain A 528 575 IPR011333 -
Ssu7g0612 577 ProSiteProfiles BTB domain profile. 539 577 IPR000210 GO:0005515
Ssu7g0612 577 Gene3D - 207 412 IPR011989 -
Ssu7g0612 577 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 573 IPR044282 -
Ssu7g0612 577 SUPERFAMILY POZ domain 531 572 IPR011333 -
Ssu7g0612 577 Gene3D - 413 524 IPR011989 -
Ssu7g0612 577 SMART arm_5 467 507 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 269 309 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 135 183 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 82 134 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 352 392 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 311 351 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 227 267 IPR000225 GO:0005515
Ssu7g0612 577 SMART arm_5 185 225 IPR000225 GO:0005515
Ssu7g0612 577 MobiDBLite consensus disorder prediction 1 34 - -
Ssu7g0612 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0612 Ssu-Chr7 12469922 12476055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0612 295 409 U-box Gene Family AT3G46510 29.915 3.79e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu7g0612 BTB 1.5e-08 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0612 - - gmx:100784348 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3110 2 92892321 92899471 Ssu7g0612 7 12469922 12476055 PCT