LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g0597	ATGTTCTCTCAAAACCTGATTCTCCCCCCCGAAAACCCTAGACCCGCGGCGTTCGCTTCGAAACCGATGAGCAATGAGATCGCAATCGCCGCGCAGAAGCCTCCGCCGTCGATTCTCGTTGGCCGCTTCAAGGCGCTCCTCAAGCAGCGCGACGACGAACTCAGGCTCTCCGCCGGCGTCCCCGTGCCGCCGCCAACCACCGACGAAATCGTCCAGTATTACGAGATGCTCTTGTCAGAACTCACCTGCAATTTGAAACCTATCATCACCGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGACGCAATTTGCGCTCGGATTCTCGAGGTGCCAGCAGATCAGAAGCTTCCTTCACTCTATCTGTTGGACAGTATCGTGAAGAATTTTGGGCAGGAATACATTAGATACTTCTCTTTACGTCTGCCAGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTAATTTGCATCCTGCTATGCGCCATCTCTTTGGTACCTGGTCAAAAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAACTGCGTTGCAGTTTTCTCAAGCAGTTAATAATCAATCATCCACCCTGAATCCTGTCAGGGCTTCTGAATCTCCTCGACCAAGTCATGGCATACATGTTAATCTGAAATACTTGCGGCAGTTGGAGCGCTCAACTGTGGATAGTGTTGGGGAAAAGTTGGATTCATCAGGAAATGCTAGTAATACAAACTTTGGCTTTGTAGCTAGTAAGGCACATCAATTTTTATCAAGCAGTAACAGGCTTGGAATATCCTCGTCGTCCCCTTCAAGAATTGGACTTGATAGGCCTTTGTCTGCATCTATAGATGAATATGCAGTTGACAATTCTGCTGGCAGGTTAATGGAGAGAGACTCTCCTCATCCTGCTGTTGATTATGGAGTAGCCAAACCATTAGGTAGAGATGTGGAGTTGAGTGAATGGCAGCGAAAGCAGTATTCTGGTGATGGTCGTAATCGATTTCCAACTTCTATTACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCATATGGTAGTGACAAAAGTCAAGAAACTTCAAGCAGTAAGCCATTGTTAGCTGACCGGCTGGATAGAAATGGTATAGACAAAGTGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCGACCTTAATAGACCATAGTAGGAATAACAGTTTATTGCCTTCAACTATTGGTTTCTCTGGGGAAAGGCCTGTTGTTGCAGCTAATGCAACTTCGTCAGAGCAAGATACCAGGAAGGGTTGGTCTAGTGGATCTCAGCTTCCTCCAGTAGATGATTCTTCTGCCGTAGCAGAAGATGCATTTGCCTCTTCAGCTTTTCGTCGTGCACCCCCGGGTCAGGTCCCTCGAttccaaaatcaaatcaatcatAGTCTGGGCTCCGCTCAACCTCATGATGCTTGGAAGATTTCTCATCATCCGTCTAACTCATCACAACATATCTTTAGTAATAGGGGGCGAGCAAGGACTCTTTCGATCCCTCCTATTGATAACATTTGCAATACAGATATAAACCCATATCGGGTTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCTTGTCTCTAATGTGGAACCTCGCTCATCAGTTTTGCCAGCATCTTTTGAAATAAGGCCTTCTGTAAATCTGAATGTCACTCGACCTCCTACCTTAAATCCGATATCTCCGTTGCAAAAACATGTTAGGAGTCAGTTTGAAGCAATACATACTAGTAACCCTATTGTGAACCACCATGTAAATAAATCTTCGTTTATGCCAGAACAGTCATTTGACAGTGTTGAGAACAAGGATGCACGTATTTCAAAGATTCATCAGTTGCCTAATCAGCTTCCTGGACTAATTTCGTCCAACCAGCAAAATCATGGGCAAGCACCACAACTACAGTTTTTTCCATCTCAGGATCCATCAACCTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTGCTTCTATAAGTACAGCCATGTCAAATCCGTTACCTGTTATACAATTCCCTTTACCAGTCCAAAGTATTGCAAATAACTCTTTGCATTTACAGGGTGGAGTCCGTCCACCTTTACCTCCAGGTCGCCCTCCTGGTCCATCTCAAATGATACCTCATCCAAATGCTAGTCCATTTATGTCAAGCCAACAGCCAGCTGTTGgatatactaatttaattagttcTCTAATGTCTCAAGGCGTGATCTCATTGGCTAACCAGCTACCTGCACAGGATTCTGTTGGAACTGAGTTTAATCCAGAAGTTCTGAAGCTTCGTTATGAGTCTGCAGTCAACGCTTTATATGGTGATCTCCCTAGACAATGCACAACTTGTGGGCTGCGATTCAGATGCCAAGAGAAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCCGTAAGCAGAAACCCTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTTTTGCCAACAGAAACcgtagaagaaagaaaagatcatGAAGAGTTGGCAGTGCCGGCAGAAGAGGACCAGAATACATGTGCATTATGCGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCTATGCACCCACAGGGGCAACAACTGGCATGGACAGGTCACAGTTAGGCCCCATAATTCATGCTAAATGCAGATCAGAATCTAATATGGTGGCCCCCTCTGAAGATCTTGGGCTCGATGAAAAGGGTGCCGATGAAGAGGGTACCCCAAGGAAACGAATGCGGAGTTGA	2925	0.4506	MFSQNLILPPENPRPAAFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLSAGVPVPPPTTDEIVQYYEMLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQPNLHPAMRHLFGTWSKVFPPSVLRKIETALQFSQAVNNQSSTLNPVRASESPRPSHGIHVNLKYLRQLERSTVDSVGEKLDSSGNASNTNFGFVASKAHQFLSSSNRLGISSSSPSRIGLDRPLSASIDEYAVDNSAGRLMERDSPHPAVDYGVAKPLGRDVELSEWQRKQYSGDGRNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLADRLDRNGIDKVLSTSWQNTEEEEFDWEDMSPTLIDHSRNNSLLPSTIGFSGERPVVAANATSSEQDTRKGWSSGSQLPPVDDSSAVAEDAFASSAFRRAPPGQVPRFQNQINHSLGSAQPHDAWKISHHPSNSSQHIFSNRGRARTLSIPPIDNICNTDINPYRVRPAVSRMVSGLVSNVEPRSSVLPASFEIRPSVNLNVTRPPTLNPISPLQKHVRSQFEAIHTSNPIVNHHVNKSSFMPEQSFDSVENKDARISKIHQLPNQLPGLISSNQQNHGQAPQLQFFPSQDPSTSQFSHGSSLQGHGASISTAMSNPLPVIQFPLPVQSIANNSLHLQGGVRPPLPPGRPPGPSQMIPHPNASPFMSSQQPAVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPEVLKLRYESAVNALYGDLPRQCTTCGLRFRCQEKHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETVEERKDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGATTGMDRSQLGPIIHAKCRSESNMVAPSEDLGLDEKGADEEGTPRKRMRS	974

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g0597	974	CDD	CID_Pcf11	71	190	-	-
	Ssu7g0597	974	Gene3D	-	64	192	IPR008942	-
	Ssu7g0597	974	MobiDBLite	consensus disorder prediction	333	358	-	-
	Ssu7g0597	974	MobiDBLite	consensus disorder prediction	441	462	-	-
	Ssu7g0597	974	ProSitePatterns	Zinc finger C2H2 type domain signature.	807	827	IPR013087	-
	Ssu7g0597	974	Pfam	CID domain	84	185	IPR006569	-
	Ssu7g0597	974	MobiDBLite	consensus disorder prediction	949	974	-	-
	Ssu7g0597	974	MobiDBLite	consensus disorder prediction	335	356	-	-
	Ssu7g0597	974	MobiDBLite	consensus disorder prediction	441	460	-	-
	Ssu7g0597	974	ProSiteProfiles	CID domain profile.	66	194	IPR006569	-
	Ssu7g0597	974	PANTHER	POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4	35	948	-	-
	Ssu7g0597	974	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	35	948	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Ssu7g0597	974	SUPERFAMILY	ENTH/VHS domain	66	192	IPR008942	-
	Ssu7g0597	974	SMART	558neu5	69	191	IPR006569	-
	Ssu7g0597	974	MobiDBLite	consensus disorder prediction	647	686	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g0597	Ssu-Chr7	12213075	12221731	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g0597	703	974	C2H2 Transcription Factor Family	AT4G04885	57.143	5.35e-99	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g0597	K14400		-	gmx:100794796	1644.4