Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0596 ATGTATCACAGTCACACAAACGTGTTCGATTCTCACCAACACTTGCTCGACATGTCATCACACAGGGCATCCTCGGAGAGTGAATTGGGAAGGAACAGAGATGATGAATCTGGCAACGAGATAATGGAAGCTCCTCCTTCCGGCGACGACCAAGATCCCAACAAACGAGCAAAAAAGAAGCGCTACCACCGCCACACACAGCTTCAAATTCAGGAGATGGAAGCCTTCTTCAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAAGAGCTGAGCCGCGAGCTCGGGCTGGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGTACCCAAGTGAAGGCTCAACATGAACGCCATGAGAACAATCTTTTGAAGGCTGAGAATGAAAAGCTTCGAGCAGAGAACTCTAGGTACAAGGAGGCACTAAGTAATGCTGCATGCCCTAGCTGTGGAGGCCCCACTGCTCTCGGTGAAATGTCCTTTGACGAGCAGCACCTGAGGATTGAGAATGCGCGATTAAGAGAAGAGATTGATAGGATGTCAGGAATCGCAGCCAAATATGCTGGAAAACCTGCGAGTTCGTACTACAGCATGTCATCTCAAAACCACATGGCTTCGCACTCGCTTGATGTGGGAGTTGGCAACTATGGAGCACAGTCAGGCATGGTAGGGGAAATGTATGGTGGCAGTGACCCTCTTAGGGCATTCCCAGTTCCTACTGATGCTGAAAAAACCATCATAGTGGAGCTTGCTGTCGTAGCAATGGACGAACTCACAAGGTTGGCTCTGTCCGGAGAACCTTTGTGGGTCCCTGGACCCTACGGCACTGAGATTCTTAATCAAGATGAATACTTGAGGCTTTTCCCTAGGGGAATAGGTCTAAATTCCTTGTGCTTAAGAACCGAAGCTTCAAGGCAATCCGCGGTAGTCATCATGAATCAGATTAACCTCGTTGAGATCCTTATGGATGTGAATCAATGGTCAAACATGTTTTGTGGTATCGTTTCAAGAGCGACGACACTCGAAGTGCTGTCTACTGGAGTGGCAGGAAACTTGGATGGGGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGTTTGTTCCTACTCGTGACACCTATTTCGTGAGGTACTCTAAGAAGCACGCAGGAGAATCATGGGCGGTGGTTGATTTTCCCTTTGATCATCTGCGACCCAGTGCAATCTTAAGGAGCCGAAGACGACCCTCTGGTTGCATAATTCAAGAATTGCCAAATGGTTACTCAAAGGTTATATGGGTTGAACATGTTGAAGTGGATGATAGAGAGGTGCATAATCTTTACAAAATCTTGGTCAATTGTTGCCTTGCCTTTGGAGCTAAACGGTGGGTGGCATCATTAGACAGACGATGCGAACGTCTTGCTAGCTCAATGGCCACCAACATACCCGCAGGGGACCTTTGTGTGATAACATGTCACGAGGGAAGGAAAAGTATGCTGAAGCTGGCTGAGAGAATGATATCTAGCTTTTGTACTGGTGTTGGTGCTTCTACTGCACATGCTTGGACACCACTTGCAGCTGGTGTTGAGGATGTGAGGGTCATGACCAGAAAGAGTATGGATGATCCAGGTAGACCTCCCGGTATAGTGCTCAGTGCTGCAACTTCTTTGTGGCTCCCAGTTCCTCCGAAGAgggtttttgattttcttcGAGCTGAAAACACAAGAAATCAGTGGGACATTCTCTCCAATGGGGGTAAAGTTCAAGAAATGGCACATATAGCAAATGGTCGTGATCCTGGGAACTGTGTCTCTTTACTTCGTGTCAATAGTCCTAATTCCACCCAAAGCAATATGATTATTCTTCAAGAGAGTTGCACTGATGCTACAGGCTCATATGTAGTTTATGCTCCTGTTGATCTAGTTGCCATGAATGTTGTGTTGAGTGGTGGTAATTCAGATTATGTTGCCCTCCTCCCCTCGGGCTTTGCTATTCTTCCTGATGGGCCTGGACTGAGTAACGGAGGGCCCATACTTGAAGTTGGATCTGGAGGATGTCTTCTAACAGTTGCATTTCAGATATTGGTTGATTCGGTTCCAACTGCAAAACTATCTGTTGGTTCAGTGAACACTGTTAGCAGTTTAATTAAGTGCACAGTTGAACGAATCAAAAATGCAGTAGACACAGCATCTAAGTGCTGA 2190 0.4667 MYHSHTNVFDSHQHLLDMSSHRASSESELGRNRDDESGNEIMEAPPSGDDQDPNKRAKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQVKAQHERHENNLLKAENEKLRAENSRYKEALSNAACPSCGGPTALGEMSFDEQHLRIENARLREEIDRMSGIAAKYAGKPASSYYSMSSQNHMASHSLDVGVGNYGAQSGMVGEMYGGSDPLRAFPVPTDAEKTIIVELAVVAMDELTRLALSGEPLWVPGPYGTEILNQDEYLRLFPRGIGLNSLCLRTEASRQSAVVIMNQINLVEILMDVNQWSNMFCGIVSRATTLEVLSTGVAGNLDGALQVMSAEFQVPSPFVPTRDTYFVRYSKKHAGESWAVVDFPFDHLRPSAILRSRRRPSGCIIQELPNGYSKVIWVEHVEVDDREVHNLYKILVNCCLAFGAKRWVASLDRRCERLASSMATNIPAGDLCVITCHEGRKSMLKLAERMISSFCTGVGASTAHAWTPLAAGVEDVRVMTRKSMDDPGRPPGIVLSAATSLWLPVPPKRVFDFLRAENTRNQWDILSNGGKVQEMAHIANGRDPGNCVSLLRVNSPNSTQSNMIILQESCTDATGSYVVYAPVDLVAMNVVLSGGNSDYVALLPSGFAILPDGPGLSNGGPILEVGSGGCLLTVAFQILVDSVPTAKLSVGSVNTVSSLIKCTVERIKNAVDTASKC 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0596 729 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Ssu7g0596 729 Gene3D - 47 132 - -
Ssu7g0596 729 Coils Coil 110 145 - -
Ssu7g0596 729 SMART HOX_1 57 120 IPR001356 GO:0003677
Ssu7g0596 729 CDD START_ArGLABRA2_like 245 468 - -
Ssu7g0596 729 ProSiteProfiles START domain profile. 241 472 IPR002913 GO:0008289
Ssu7g0596 729 MobiDBLite consensus disorder prediction 15 40 - -
Ssu7g0596 729 Pfam START domain 251 469 IPR002913 GO:0008289
Ssu7g0596 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 34 726 - -
Ssu7g0596 729 SUPERFAMILY Bet v1-like 490 721 - -
Ssu7g0596 729 MobiDBLite consensus disorder prediction 1 65 - -
Ssu7g0596 729 SUPERFAMILY Bet v1-like 241 471 - -
Ssu7g0596 729 CDD homeodomain 59 117 IPR001356 GO:0003677
Ssu7g0596 729 SUPERFAMILY Homeodomain-like 43 116 IPR009057 -
Ssu7g0596 729 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Ssu7g0596 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 34 726 IPR042160 -
Ssu7g0596 729 SMART START_1 250 469 IPR002913 GO:0008289
Ssu7g0596 729 Pfam Homeodomain 59 114 IPR001356 GO:0003677
Ssu7g0596 729 Gene3D - 313 467 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0596 Ssu-Chr7 12153807 12158860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0596 1 723 Homeobox Transcription Factor Family AT4G04890 72.065 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu7g0596 START 2.7e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0596 K09338 - qsu:112016283 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3123 2 93219847 93223171 Ssu7g0596 7 12153807 12158860 PCT