Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0589 ATGCCATGGAGTTCGATTCGCAGATTGAGAGGTTCGGCTCTGCAGAAATCGGCATGCTTCCGTGGTGGCAGTGAGGGGAACCCTGATTATGAATGCCTCAGGTCCGAGCTGAAGAAGATGGCTCCCCCTAATGGTCGCACTGTTTTGCTCTTTTGGGCACCCTGTTGGCTGCCCCCTTGCCAAACTCGGGGCCTCAGGTCCAAGAAGGGGAAACACCACAAGAGTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGCTGGACTTGAAGGAAAACAAGATCGTTGATGTCATCAAATTTGATGTGGGGAATGTAGTTATGGTAACTGGAGGAAGGAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGTAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGGCATGAATTTGCTACTTGTATGGGCAATGTGTTCACCATTGGCAAGGGGACAAAACCATGGGTATCACTGCCCAAGGGCAAGGATATTAAGCTATCAATCATTAAGGAAGCTAGGAAAAGGATTGCCGCCCAGCAAGCAACTACTGCTTCAAACCCCTTTCGGATGAACAGACTTGAGTGCTTGGTAGTTTTATTCaatgtttttggttttgtaatttcttttgtCTCAGATTTTATCCGTTGA 672 0.4702 MPWSSIRRLRGSALQKSACFRGGSEGNPDYECLRSELKKMAPPNGRTVLLFWAPCWLPPCQTRGLRSKKGKHHKSSSSARLGQCSLARKLDLKENKIVDVIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATCMGNVFTIGKGTKPWVSLPKGKDIKLSIIKEARKRIAAQQATTASNPFRMNRLECLVVLFNVFGFVISFVSDFIR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0589 223 Pfam KOW motif 105 138 IPR005824 -
Ssu7g0589 223 CDD KOW_RPS4 103 157 IPR041982 -
Ssu7g0589 223 PANTHER 40S RIBOSOMAL PROTEIN S4 89 148 - -
Ssu7g0589 223 PANTHER 40S RIBOSOMAL PROTEIN S4 150 192 - -
Ssu7g0589 223 Gene3D - 103 173 IPR014722 -
Ssu7g0589 223 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 150 192 IPR000876 GO:0003735|GO:0005840|GO:0006412
Ssu7g0589 223 SMART kow_9 102 129 IPR005824 -
Ssu7g0589 223 Pfam 40S ribosomal protein S4 C-terminus 140 186 IPR032277 -
Ssu7g0589 223 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 89 148 IPR000876 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0589 Ssu-Chr7 12024587 12026702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0589 89 189 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 87.129 1.51e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0589 K02987 - gmx:100811336 174.866