Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0575 ATGTTTGGGATAGGACAGTTCTACAGAGACGTTGCTATTCATGGACGCAGGCAATCCCCGCCTACTTCTAATGGTACACAGGAATCAAAACCTTCAGaAAATGGAAAGGGCTCGTTacgaataattattataattgtcatCCTTCTTCTTGTTGTTCCGGCAATGCTAAGCTCTTTTAGCTATCGATTGATACGGAGAAAAGTAAGAAAGAGCAATTACAAGATTCTTCTACGAGAAAACTTTGGTCAGGAAAGTGTCACTTTAGAGGGGTTGCAATTTGATTTGGCTATAATTGAAGCAGCAACAAATAACTTTTCACATGAAAACAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTCCCTAATGGACGACATATAGCTGCCAAAAGATTATCAACAAGTTCATCGCAAGGTTCGGTTGAattcaaaaatgagattttattGATAGCCAAACTACAACATAGAAACCTTGTGGAGTTAATAGGTTTTTGCCTAGAAGTGCAAGAGAAGATTCTTATTTACGAATATATGTCCAATGGGAGCCTTGATAgctttttatttgATCCTCAACAAAAGAAGTTAAGTTGGTTTGAGCGTTACAAAATCATAGAAGGGATTGCTCaaggaattttttatttacatgaacATTCTCGCCTTAAAGTTATACATCGTGATCTCAAAccaagtaatattttattagatgaaaatatgaatccTAAGATATCAGATTTTGGTATGGCTAGAATTGTTGAAATAGATCAAGATCGTGGAAAAACCAAGAGAATTGTCGGAACAttTGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTCTCTAAAAAGTCagatgtttttagttttggagTTATGGTTTTAGAGATTATTACGGGAAAAAGGAGTATAAATTCTCACGAATCGCACCATATTTCAGATGGTCTCATGAGTTATGTTTGGCGACAATGGAAGGACCAAGCACCATTGAGCATATTGGACCCAAATTTGGAAGAAAATTATTCTCAATTGGAATTCATTAAGTGCATTCAGATTGGTTTACTATGcgttcaagaaaataaaaatattagaccCACTATGGCAAAAGTGGTTTCATATCTAGATGGTCACACACTTGAATTGCCACCTCCACAAGAGCCAGCATTTTTGTTGCTAGATACGGTGGATAAAAAAATAGCTACACAACACTTTTCTGTAAATAAGATGtctataagtatattttatccTCGATAA 1260 0.3222 MFGIGQFYRDVAIHGRRQSPPTSNGTQESKPSENGKGSLRIIIIIVILLLVVPAMLSSFSYRLIRRKVRKSNYKILLRENFGQESVTLEGLQFDLAIIEAATNNFSHENKIGKGGFGEVYKGILPNGRHIAAKRLSTSSSQGSVEFKNEILLIAKLQHRNLVELIGFCLEVQEKILIYEYMSNGSLDSFLFDPQQKKLSWFERYKIIEGIAQGIFYLHEHSRLKVIHRDLKPSNILLDENMNPKISDFGMARIVEIDQDRGKTKRIVGTFGYMSPEYAMFGQFSKKSDVFSFGVMVLEIITGKRSINSHESHHISDGLMSYVWRQWKDQAPLSILDPNLEENYSQLEFIKCIQIGLLCVQENKNIRPTMAKVVSYLDGHTLELPPPQEPAFLLLDTVDKKIATQHFSVNKMSISIFYPR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0575 419 CDD STKc_IRAK 111 378 - -
Ssu7g0575 419 SUPERFAMILY Protein kinase-like (PK-like) 89 395 IPR011009 -
Ssu7g0575 419 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Ssu7g0575 419 ProSiteProfiles Protein kinase domain profile. 105 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0575 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Ssu7g0575 419 Pfam Protein kinase domain 106 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0575 419 MobiDBLite consensus disorder prediction 17 34 - -
Ssu7g0575 419 Gene3D Transferase(Phosphotransferase) domain 1 181 382 - -
Ssu7g0575 419 MobiDBLite consensus disorder prediction 15 34 - -
Ssu7g0575 419 SMART serkin_6 105 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0575 419 Gene3D Phosphorylase Kinase; domain 1 67 180 - -
Ssu7g0575 419 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 25 404 - -
Ssu7g0575 419 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0575 Ssu-Chr7 11723426 11727287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0575 31 419 Receptor kinase-like Gene Family AT4G05200 49.386 3.86e-131 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu7g0575 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0575 - - gmx:100783647 670.618