Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0572 ATGGTTACCAAGTCCAAAACGAACCTACTACTAATTGTCCTACTTTGCACCCTTGTGCTCACCGTTACAGAAACCTCGGCATCGGTGTTCAACAACGTCAGCTGCACAAGCAACAAGACTTTCACTCCAAACAGCACCTTCAACACCAACCTCAACACCCTTCTCTCTTCCCTCTCCTCCAACGTAACCAACAACGTTAGATTCTTCAACGCAACCGCAGGGGAAGATTCGGACACCGTCTACGGCCTCTACATGTGCCGTGGAGACGTGCCGTTTGCTCTGTGCAGAGAGTGTGTGGGTTTCGCAACACAAACCATAGCCTCGTCGTGTCCCACATCGAAAGAAGCTGTGATTTGGTACAACGAGTGCTTGTTGCGCTACTCTTATAGGTTCTTCTTCAATAAAATGGAAGAGTGGCCAAGGTACCAGATCAAGATCCCGTTGGGGGACCCTGTGGTTTTACACAGCGTTGGATTCTACACCGCATTGGGATCCATTTTTGATGAACTACCAAATGAAGCGGCACTGGCTCTACGTGATGGGTCTAATCGATATGCCGTTAAGCAAGAAAACGCTTCTGCGAGTATGACTCTGTATGGCCTCGCTCAGTGCACGCCGGACTTGTCCGCCGGCGACTGCAAACGGTGTGTCGCAGATGCGGCGGCGGAATTTGCCGAGTCCTGTTGCGGAGGAAGCATAGGGGCAAGTGTTCTGTTTCCCAGTTGCATTGTTCGGTATGAAACGTATCCGTTTTATCAGCATTCTGGAACCTCCGCGCCAACCATGGTTAAGGGTGAAAGAAATATTGGAACTGAAGTGATTGCGATCGTTGTTGTTTTGGTTGTCGTTTTGGCGATGCTTTTTTGCTTTGGCTATGGTTTCATCCGGATAAAAGCAAGAAAGAAACGCAAGGCCAGTGACAGAGAAAACTTTGGGCCACAAAACACTACCTTGGAGTCCTTGGAATTTGATTTGGCTACAATTGAAGCAGCAACAAACAAGTTTTCTGAAGAACGCAGGATCGGCAAAGGGGGTTATGGAGAAGTCTACAAGGGAATTCTTCCCGACGGAGAAGAAATAGCTGTAAAGAGACTGTCAACAAATTCTAGGCAAGGAGTGGAGGAATTCAAAAATGAAGTGTTGTTAATAGCTAAACTTCAACACAAAAATTTGGTGAGGTTAATAGGATTTTGCCAAGAAGACAAGGAGAAAATACTTATCTATGAATATGTGCCTAATAGGAGCCTtgatcacttcttatttgATCCCCAAAAGCGAAGACAATTAACTTGGTCGGAGcgatataaaatcattaaaggAATTGCAAGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTTAAGATTATACACCGTGATATCAAACCAAGCAATGTTCTATTGGACAATGGCATCAATCCAAAAATCTCTGATTTTGGAATGGCAAGGATGGTAGCTACAGACCAAATTCAAGGATGTACGAATAGAGTTGTAGGCACATATGGTTATATGTCTCCTGAATATGCAATGCATGGACAATTTTCTGAGAAGTCTGATGTATTCAGCTTTGGAGTTATGGTTCTTGAGATTATTAGTGGGAAGAAGAATTCTTGTTCTTTTGAATCATGTCGTGTTGATGACCTCTTAAGTTATGTGAGTATCAAATTCTTGTTTGTTCTcttattctttgtatttttcttgtcttGGCCTCTACTGGACCATAGTTCAAAAAAGACAGAAGGACAAATTAAGAAGGCAATAAAAGggaaatctatttaa 1779 0.4216 MVTKSKTNLLLIVLLCTLVLTVTETSASVFNNVSCTSNKTFTPNSTFNTNLNTLLSSLSSNVTNNVRFFNATAGEDSDTVYGLYMCRGDVPFALCRECVGFATQTIASSCPTSKEAVIWYNECLLRYSYRFFFNKMEEWPRYQIKIPLGDPVVLHSVGFYTALGSIFDELPNEAALALRDGSNRYAVKQENASASMTLYGLAQCTPDLSAGDCKRCVADAAAEFAESCCGGSIGASVLFPSCIVRYETYPFYQHSGTSAPTMVKGERNIGTEVIAIVVVLVVVLAMLFCFGYGFIRIKARKKRKASDRENFGPQNTTLESLEFDLATIEAATNKFSEERRIGKGGYGEVYKGILPDGEEIAVKRLSTNSRQGVEEFKNEVLLIAKLQHKNLVRLIGFCQEDKEKILIYEYVPNRSLDHFLFDPQKRRQLTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNGINPKISDFGMARMVATDQIQGCTNRVVGTYGYMSPEYAMHGQFSEKSDVFSFGVMVLEIISGKKNSCSFESCRVDDLLSYVSIKFLFVLLFFVFFLSWPLLDHSSKKTEGQIKKAIKGKSI 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0572 592 Gene3D Phosphorylase Kinase; domain 1 295 410 - -
Ssu7g0572 592 SUPERFAMILY Protein kinase-like (PK-like) 315 544 IPR011009 -
Ssu7g0572 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Ssu7g0572 592 SMART serkin_6 335 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0572 592 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 552 - -
Ssu7g0572 592 Pfam Salt stress response/antifungal 35 128 IPR002902 -
Ssu7g0572 592 Pfam Salt stress response/antifungal 159 249 IPR002902 -
Ssu7g0572 592 ProSiteProfiles Protein kinase domain profile. 335 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0572 592 Pfam Protein kinase domain 336 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0572 592 ProSiteProfiles Gnk2-homologous domain profile. 140 251 IPR002902 -
Ssu7g0572 592 Gene3D - 28 132 IPR038408 -
Ssu7g0572 592 Gene3D - 154 251 IPR038408 -
Ssu7g0572 592 Gene3D Transferase(Phosphotransferase) domain 1 411 555 - -
Ssu7g0572 592 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Ssu7g0572 592 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Ssu7g0572 592 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 552 - -
Ssu7g0572 592 CDD STKc_IRAK 341 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0572 Ssu-Chr7 11550567 11554054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0572 10 552 Receptor kinase-like Gene Family AT4G05200 45.826 2.02e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu7g0572 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0572 - - gmx:100791642 922.924