Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0560 ATGGCTTGGAATTCCCTCAagcttctctttctctttgtccTTATTTCCTTCCTCAGTTTTGTAACAACTAAGGCACAAAGCCCTACTTTTCTTTACCAGAATTGCTCAAGCAACAGAACCACAGCCAACAGCGCCTTCCAATTAAACGTCATGACCCTCTTCTCTTCATTATCTTCCAACGCCACCGCCAACAATGAATTCTACAACGCCACAGTCGCGGGAAGAAATCCCTCGGACACAGTCTATGGTCTCTACATGTGCAGGGGTGACGTCTCATTTCAGCAGTGTGGACAGTGCGTGGTAAACGCAACGCAGAAACTATCATCAGAATCAGAGTGCTCCTTGTCCAAAGAGGCCGTGATCTGGTATGACGAGTGCATGGTTAGGTACTCCAACCGCTCCTTTTTCTCCACCGTAGACACAAGGCCCCGTGTTGGCCTGTTGAACAGCGCCAATGTCTCGAACCAGGCAAGCTTCATGCGTTTGGTGTACGACACCATGAACGAAACAGCAGATGAAGCAGCCAGTTCTCCTATCGGTGCGAAGAAATATGCCACAAATCAAGCAAACATATCTGGCTTTCAGACCCTTTATTGTCTGGTTCAGTGCACGCAGGACTTGTCGCCCCAAGGTTGCAGAAGTTGTCTTAGTGTTGCCATAGGGCAACTTTCATGGTGCTGTGAAGGAAAACAGGGAGGGAGAATTCTAAATCCCAGCTGTAATATTAGGTATGACTTGTACCCTTTCTATAGCACCAACACCACTGCTTCCGCACCAACGCCTACAACATCAGGGCCTGTTCCTCCAACTCCAACCAATTCTTCCAACTCGGGAGGAAGTAGTGGGATCTCATCGGGGACGATTGTTGCAATTGTGGTTCCAATTACGGTGGCTGTGCTGCTATTTATTGTGGGCATTTGGCTCTTAAGTAAAAGAGCAGCAAAGAAGCGTAACTCTGCACAAGACCCAAAGACTGGAACTGAGATCAGTGCCGTGGAATCCTTGAGATTTGATTTCATTACAATTAAAGCAGCCACAAATAAATTCTCTGATACTAACAAGCTAGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCTAGCGGACAAGAAGTTGCTGTCAAGAGACTCTCTAAAAGCTCTGGACAAGGTGGGGAAGAATTTAAGAATGAAGTAGAGGTGGTTGCAAAGCTTCAACACAGAAATTTGGTGAGGCTTCTAGGATTTTGCTtggaaggagaagagaagatacttatttatgaatttgtagCCAACAAAAGCCTTGACTATATTATATTTGATCCTGAAAAGCAAAGATCATTGGATTGGACAAGGCGTTACAAAATTGTCGAAGGGATTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAAAATTATACATCGTGATCTTAAAGCTAGCAACGTATTGTTGGATGGAGATATGAATCCAAAAATCTCGGATTTTGGCATGGCAAGAATATTTGGAGTGGATCAAACTCAAGCAAATACCAATAGGATTGTAGGGACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAGAATACTCGGCTAAGTCTGATGTGTACAGTTTTGGAGTCCTCATTTTGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGACGTTGCTGAGGATCTATTGAGCTATGCCTGGAAACTTTGGAAGGATGAAGTACCTTTGGAGCTGATGGACCACTCATTAAGAGAATCATATGCTCCAAATGAAGTTATCAGATGCATCCATATTGGTTTACTCTGTGTCCAAGAAGATCCAGCAGATAGACCTACAATGGCAACAGTAGTTCTTATGCTTGATAGTTACACTGTTACTCTACCCGTACCTAATCAGCCTGCATTCTTTATAGCTAGTAGAACTGAACCAAACATGCCAAAGGGGCTTAAAATTGATCAGTCTACTACCAATTCAACAACAAAGTCTGTCAATGAGATGTCGGTTAGTGAAGTGGATCCTCGATAA 2025 0.4267 MAWNSLKLLFLFVLISFLSFVTTKAQSPTFLYQNCSSNRTTANSAFQLNVMTLFSSLSSNATANNEFYNATVAGRNPSDTVYGLYMCRGDVSFQQCGQCVVNATQKLSSESECSLSKEAVIWYDECMVRYSNRSFFSTVDTRPRVGLLNSANVSNQASFMRLVYDTMNETADEAASSPIGAKKYATNQANISGFQTLYCLVQCTQDLSPQGCRSCLSVAIGQLSWCCEGKQGGRILNPSCNIRYDLYPFYSTNTTASAPTPTTSGPVPPTPTNSSNSGGSSGISSGTIVAIVVPITVAVLLFIVGIWLLSKRAAKKRNSAQDPKTGTEISAVESLRFDFITIKAATNKFSDTNKLGEGGFGEVYKGLLPSGQEVAVKRLSKSSGQGGEEFKNEVEVVAKLQHRNLVRLLGFCLEGEEKILIYEFVANKSLDYIIFDPEKQRSLDWTRRYKIVEGIARGIQYLHEDSRLKIIHRDLKASNVLLDGDMNPKISDFGMARIFGVDQTQANTNRIVGTYGYMSPEYAMHGEYSAKSDVYSFGVLILEIISGKKNSSFYETDVAEDLLSYAWKLWKDEVPLELMDHSLRESYAPNEVIRCIHIGLLCVQEDPADRPTMATVVLMLDSYTVTLPVPNQPAFFIASRTEPNMPKGLKIDQSTTNSTTKSVNEMSVSEVDPR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0560 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Ssu7g0560 674 SMART serkin_6 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0560 674 CDD STKc_IRAK 355 621 - -
Ssu7g0560 674 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Ssu7g0560 674 MobiDBLite consensus disorder prediction 646 674 - -
Ssu7g0560 674 Gene3D - 144 249 IPR038408 -
Ssu7g0560 674 Gene3D - 27 135 IPR038408 -
Ssu7g0560 674 Pfam Protein tyrosine and serine/threonine kinase 352 618 IPR001245 GO:0004672|GO:0006468
Ssu7g0560 674 Pfam Salt stress response/antifungal 35 132 IPR002902 -
Ssu7g0560 674 Pfam Salt stress response/antifungal 152 246 IPR002902 -
Ssu7g0560 674 ProSiteProfiles Gnk2-homologous domain profile. 141 249 IPR002902 -
Ssu7g0560 674 Gene3D Phosphorylase Kinase; domain 1 309 424 - -
Ssu7g0560 674 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 672 - -
Ssu7g0560 674 MobiDBLite consensus disorder prediction 257 279 - -
Ssu7g0560 674 ProSiteProfiles Gnk2-homologous domain profile. 28 135 IPR002902 -
Ssu7g0560 674 MobiDBLite consensus disorder prediction 648 667 - -
Ssu7g0560 674 SUPERFAMILY Protein kinase-like (PK-like) 334 642 IPR011009 -
Ssu7g0560 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 672 - -
Ssu7g0560 674 ProSiteProfiles Protein kinase domain profile. 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0560 674 Gene3D Transferase(Phosphotransferase) domain 1 425 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0560 Ssu-Chr7 11142523 11145771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0560 5 674 Receptor kinase-like Gene Family AT4G05200 53.010 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu7g0560 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0560 - - gmx:100787420 1108.59