Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0554 ATGTTAGATACGCATTGTACCGCTTTTACAATACTAGCGGGACGTCAGCGCCGCCGTCAGcttttgtacTTGGATGTTGCTCTAGTTGGGAATGAAAGTGCCACTTTGGAGTCGTTACAATTTGGTTTGGCCACAATTGAAGCTGCCACAAAGAAGTTTTCATATGAAAACAGAATAGGTGAAGGTGGATTTGGAGCGGTTTATAAGGGTATTCTTCCAGATGGACGAGAAATAGCTGTTAAAAAACTCTCACAAAGTTCGACACAAGGTGCAGCAGAATTcaagaatgaaattttattgataGCGAAACTTCAACATAGAAATTTAGTGACATTGCTAGGATTTTGTTTGGAAGAGCAAGAGAAAATGcttatttatgaatttgtgTCCAATAAAAGCCTTGACTTCTTTCTATTcgTTTTGGAGATAATTAGTGCAAAAAGGAATGCTCGTTCTGTTTTTTCATATCATGATGACCTCCTGAGTTATGCTTGGGAACAATGGAGGGATCAAACACCATTAAACATATTAGACCAAAATATTAAGGAATCTTGCAATCATAGCGAAGTCATTAAATGTATCCAAATTGGTTTATTATGTGTACAAGAGAAGCCAGATGACAGACCTACAATGACACAAGTTATTTCCTATCTCAGTAGCTCTATAACTGAGTTGCCATTTCCTGGAAAACCGATAAATTCTAAAGAAAGTGGAATAGTTCAAAAGATGGTAGCAGGGGAATCGAGTTCAGGTTCTGCACTATCAATCAATGAAATGTCCACGAGCATAATTTTTCCTCGGTAG 804 0.3607 MLDTHCTAFTILAGRQRRRQLLYLDVALVGNESATLESLQFGLATIEAATKKFSYENRIGEGGFGAVYKGILPDGREIAVKKLSQSSTQGAAEFKNEILLIAKLQHRNLVTLLGFCLEEQEKMLIYEFVSNKSLDFFLFVLEIISAKRNARSVFSYHDDLLSYAWEQWRDQTPLNILDQNIKESCNHSEVIKCIQIGLLCVQEKPDDRPTMTQVISYLSSSITELPFPGKPINSKESGIVQKMVAGESSSGSALSINEMSTSIIFPR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0554 267 ProSiteProfiles Protein kinase domain profile. 53 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0554 267 SUPERFAMILY Protein kinase-like (PK-like) 38 223 IPR011009 -
Ssu7g0554 267 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 139 - -
Ssu7g0554 267 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 140 267 - -
Ssu7g0554 267 Gene3D Transferase(Phosphotransferase) domain 1 135 226 - -
Ssu7g0554 267 Pfam Protein tyrosine and serine/threonine kinase 55 138 IPR001245 GO:0004672|GO:0006468
Ssu7g0554 267 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Ssu7g0554 267 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 140 267 - -
Ssu7g0554 267 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 139 - -
Ssu7g0554 267 Gene3D Phosphorylase Kinase; domain 1 21 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0554 Ssu-Chr7 10794376 10796750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0554 31 139 Receptor kinase-like Gene Family AT4G23130 65.138 4.06e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu7g0554 PK_Tyr_Ser-Thr 3.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0554 - - gmx:100790585 288.115