Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0552 ATGATTTCTTGGCTGCtgcttttttcatttctttctctccttgCCATACTCAAATCTGAAGCCAACGACCAGCTAGAATTCACGTACCATAAATGTAACGACCAGCTCGGAAACATTACCACTGGCACCTACGCCAACAACCGGAATACCCTTTTAACCAAATTGTCTTCTGACCAAGAAATTGACTACGGCTTCTACAATTTATCCCATGGCGAAGACCCTGACAAAGTTTACGCTATCGTGCTCTGCAGAGGAGATGTTAAGCCAGATAAATGCCGTGATTGCCTGGCACAGTCCGCAGTCCTTCTCAGAGAGCGGTgcccaaaacaaaaagaggcgATTGGATGGTTTGACGAGTGCATGCTACGCTACTCTAACCACTCAATAGTTGGTGTCATGGTAACTCAACCTGAAAACATTTTGTGCAGCAGAAATAACGCGACAAACAAAGATCGGTTTGATCAAGCGGTGGATGACTTGGTGGACAGACTGAGTAGCGCGGCGGCAAACGGTGACTCCCGTCGCAAGTTCGCTGAAGGAGATGCTCCAGTTCAATCAAGCAATGACACCGTACATGCTCTCCTTCAGTGCACACCTGATTTGTCTAACCAAAACTGTACTCAATGCTTGCAGTATGCTATGTCGcgtatttcatatttttgtaaagGAGAAACAGGTGGTCGATATCTAGGACCAAGCTGTTCTGTTAGATATGAGACCTACCTCTTTTTTGAGCCCATAGTCGATGCACCAGCACCACAGCCTTCCCTGGCAGTTCTCcctccttctcctcctcctcccaAAAAAGgaAAGAGCAACCGATCACGGACCACCATTGCTATAGTCGTGCCAGTTGGTGCGGTTGTTTTACTTCTGGTTCTTATCTACAATTATTTAGGAGCGAGAAGACGAAGACACAAACCTATCAAAAGTGAAGAAGGTGAGGGTGAGGGTGAAGGTGATGATGAAGCTGAACCTGAACCTGATAATGACATCAAAACAGATGAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCTACAAATAACTTCTCTGATGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTCTATAAGGGTACGCTCTCTGATGGACAAGAAATTGCTATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAGACagaatttaagaatgaaatCTTGCTAACGGGAAAGCTTCAACACCGAAACTTAGTTAGACTACTTGGCTTTTGTTTTGCAAGACGAGAAAGACTATTGATATATGAGTTCGTTCCTAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAAACGTGTGAATTTGAATTGGGAAAGCcgctacaaaatcataaaaggcATTGCCTGA 1380 0.3964 MISWLLLFSFLSLLAILKSEANDQLEFTYHKCNDQLGNITTGTYANNRNTLLTKLSSDQEIDYGFYNLSHGEDPDKVYAIVLCRGDVKPDKCRDCLAQSAVLLRERCPKQKEAIGWFDECMLRYSNHSIVGVMVTQPENILCSRNNATNKDRFDQAVDDLVDRLSSAAANGDSRRKFAEGDAPVQSSNDTVHALLQCTPDLSNQNCTQCLQYAMSRISYFCKGETGGRYLGPSCSVRYETYLFFEPIVDAPAPQPSLAVLPPSPPPPKKGKSNRSRTTIAIVVPVGAVVLLLVLIYNYLGARRRRHKPIKSEEGEGEGEGDDEAEPEPDNDIKTDELLQFDFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGKLQHRNLVRLLGFCFARRERLLIYEFVPNKSLDYFIFDPNKRVNLNWESRYKIIKGIA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0552 459 Pfam Protein tyrosine and serine/threonine kinase 356 448 IPR001245 GO:0004672|GO:0006468
Ssu7g0552 459 MobiDBLite consensus disorder prediction 255 269 - -
Ssu7g0552 459 ProSiteProfiles Protein kinase domain profile. 352 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0552 459 Gene3D Phosphorylase Kinase; domain 1 321 427 - -
Ssu7g0552 459 MobiDBLite consensus disorder prediction 255 275 - -
Ssu7g0552 459 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Ssu7g0552 459 MobiDBLite consensus disorder prediction 315 330 - -
Ssu7g0552 459 SUPERFAMILY Protein kinase-like (PK-like) 336 459 IPR011009 -
Ssu7g0552 459 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 459 - -
Ssu7g0552 459 MobiDBLite consensus disorder prediction 309 331 - -
Ssu7g0552 459 Gene3D - 24 128 IPR038408 -
Ssu7g0552 459 Gene3D - 136 243 IPR038408 -
Ssu7g0552 459 ProSiteProfiles Gnk2-homologous domain profile. 135 243 IPR002902 -
Ssu7g0552 459 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 459 - -
Ssu7g0552 459 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Ssu7g0552 459 Pfam Salt stress response/antifungal 142 241 IPR002902 -
Ssu7g0552 459 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0552 Ssu-Chr7 10558531 10570553 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0552 7 459 Receptor kinase-like Gene Family AT4G05200 43.939 8.35e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu7g0552 PK_Tyr_Ser-Thr 8.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0552 - - gmx:100787936 622.468