Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0545 ATGGACATGTTTAAGCAGAGGAAGAAAAATACAGGCCGCAAAAAGATTGAGATCAAGAAGCTTGACAAAGCTAGCAACAAGCAAGTCACATTCTCAAAAAGAAGAACTGGACTGTTCAAAAAAGCCAGTGAACTCTGCATTTTATGCAATGTTTATGTTGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCAGACATTGACACCATTATTTCTCGCTATCTCAAAGGAACCACAGAGTTTGAACCGGCAATGTCAAGAGGGAAATCAGTGTCATATGAAGAGCGTAACAGGCAATACGAGGAGGCAATGAAGAAGTTGGAGTTGGAAAAGAAGAATCTGGCACAAACTGAAACTTTGGCTAAGGGTTGGAACAGAAGGTGGTGGGATGACCCCATTGATCAGATGAGTGATCATCAGTTGGAGCAGTTTATGGTGTCCATTTATGAGTTAAGGAAAAAACTAGCAGAAAGGGCAGGTGAATTGATGATGCTTGCAATGTTATAG 522 0.41 MDMFKQRKKNTGRKKIEIKKLDKASNKQVTFSKRRTGLFKKASELCILCNVYVAIIVFSPADKLFCFGHPDIDTIISRYLKGTTEFEPAMSRGKSVSYEERNRQYEEAMKKLELEKKNLAQTETLAKGWNRRWWDDPIDQMSDHQLEQFMVSIYELRKKLAERAGELMMLAML 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0545 173 Coils Coil 95 125 - -
Ssu7g0545 173 Gene3D - 24 110 IPR036879 GO:0003677|GO:0046983
Ssu7g0545 173 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Ssu7g0545 173 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Ssu7g0545 173 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Ssu7g0545 173 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Ssu7g0545 173 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Ssu7g0545 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Ssu7g0545 173 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 170 - -
Ssu7g0545 173 PANTHER MADS BOX PROTEIN 8 170 - -
Ssu7g0545 173 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Ssu7g0545 173 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0545 Ssu-Chr7 10088319 10088840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0545 8 168 Type I MADS-box Gene Family AT5G60440 39.655 2.75e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu7g0545 SRF-TF 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0545 - - gmx:100814979 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0545 7 10088319 10088840 Ssu7g0545 7 10088319 10088840 ECH