Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0530 ATGTCTCTCTCGTCGGACCGCTCCGCCGCCGGTGACCTCCTATGCGCCGAAGACGCCAGCGAAGTGACCTCCGACCACCACCCGCCGCCGCCCCCGGAACCCCTCTCGCAGGATTCCGACGAGGCCGCGATCGCCGGACTCCTCGGGGCGGAGACTCACCACATGCCGGAGAAAGACTACCTCCGGCGCCTCCGCGACCGCTCCGTGAACGTCACTGCGCGCTTGGACGCCGTCAACTGGATCTTAAAGGTCCACGCATTCTACCAGTTTCGTCCCGTAACGGCGTTTCTCTCCGTCAACTATTTCGACCGTTTCCTCTCCTGCTGTTCTCTTCCGCGACCTAGTGGGTGGCCGTTTCAGCTTCTATCAGTGGCGTGTTTGTCTTTAGCGGCGAAAATGGAGGAGCCCCATGTGCCGTTCTTACTGGACCTGCAATTGTTCGAGCCCCGGTTCGTGTTCGAGCCCAAAACGGTTCAGAAAATGGAGCTTTGGGTCATGAGCAATCTCAAATGGAGACTCCGCTCTGTCACACCGTTCGATTATCTTCATTATTTCATCTCCAAGCTCCCTTCTTCCTCCGAATCCGTGAACCACTTCTTCTCCTCAGCCTCCGACCTCATTATCAGCACCACTCGTGTGATTGACTTCTTGGGGTTCGCCCCGTCCACCGTGGCAGCCGCCGCCGTGCTATGCTCAGCCGGCCGTGACATTGTTTCCGCCAACGGACAATTGCCGCTGAGTTTTAACGACAGAGTGAACAAAGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTCCCGCATCTAGTTCTGGCGTCAAAGCCAGGATAGCCGAGCCCGTGCCGCCGTCGAGTCCCGTCGGCGTGCTCGACGCCGCCACCTGTGGGAGCTGCGACACGCCTTCGGAGAGGAATTGCGTTGGCTCAAGCGGGGAACAAGCCGAGCCGCCAAATAAACGGCTCCGATCCTCTGTTCCGGATGCACCGCAGCGGTAG 1014 0.5897 MSLSSDRSAAGDLLCAEDASEVTSDHHPPPPPEPLSQDSDEAAIAGLLGAETHHMPEKDYLRRLRDRSVNVTARLDAVNWILKVHAFYQFRPVTAFLSVNYFDRFLSCCSLPRPSGWPFQLLSVACLSLAAKMEEPHVPFLLDLQLFEPRFVFEPKTVQKMELWVMSNLKWRLRSVTPFDYLHYFISKLPSSSESVNHFFSSASDLIISTTRVIDFLGFAPSTVAAAAVLCSAGRDIVSANGQLPLSFNDRVNKEMVRCCHQLMEEYVVDTCPASSSGVKARIAEPVPPSSPVGVLDAATCGSCDTPSERNCVGSSGEQAEPPNKRLRSSVPDAPQR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0530 337 SUPERFAMILY Cyclin-like 41 173 IPR036915 -
Ssu7g0530 337 Pfam Cyclin, C-terminal domain 176 271 IPR004367 -
Ssu7g0530 337 Pfam Cyclin, N-terminal domain 50 173 IPR006671 -
Ssu7g0530 337 Gene3D - 57 174 - -
Ssu7g0530 337 PANTHER CYCLINS 33 327 IPR039361 -
Ssu7g0530 337 MobiDBLite consensus disorder prediction 18 38 - -
Ssu7g0530 337 ProSitePatterns Cyclins signature. 74 105 IPR006671 -
Ssu7g0530 337 Gene3D - 47 261 - -
Ssu7g0530 337 MobiDBLite consensus disorder prediction 311 337 - -
Ssu7g0530 337 PANTHER CYCLIN-D2-1-LIKE 33 327 - -
Ssu7g0530 337 SMART Cyclin_C_2 176 292 IPR004367 -
Ssu7g0530 337 CDD CYCLIN 74 163 IPR013763 -
Ssu7g0530 337 SMART cyclin_7 79 167 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0530 Ssu-Chr7 9755129 9756772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0530 12 293 Core Cell Cycle Gene Families AT1G70210 42.268 1.14e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0530 K18810 - gmx:100776178 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0530 7 9755129 9756772 Ssu7g0530 7 9755129 9756772 ECH