Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0527 ATGGCCAGTTTTGCAGGAACCACACAGAAGTGCATGGCTTGTGACAAAACGGTGTACCTTGTTGATAAGCTAACTGCAGATGGCCGAATCTATCATAAGGCCTGCTTCCGATGCCACCATTGCCGTAATACCCTTAAgCTTAGCAACTACTGTTCTTTTGAGGGGGTGCTTTACTGCAGACCTCACTATGATCAACTCTACAAGCGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAATACCCAAAATTCAGAAACCAGAGAGACAGGCCACTGATAATGAGAAGAATACCAAGGTCCTTGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGTGTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGgTTACGGTTAATGGGACTCCCTACCATAAGGGTTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTTGTTACACACGAGGGAAAGCTCTACTGCAAACACCATCACATTCAACTTTtcaaagagaaaggaaattaCAGTCAGCTTGAGAATGACCAATTAGCTACCACGGAAATCGCTTTTTGA 567 0.4321 MASFAGTTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGIPKIQKPERQATDNEKNTKVLANVFLGTRDKCVCCKKTVYPTERVTVNGTPYHKGCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDQLATTEIAF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0527 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Ssu7g0527 188 SMART lim_4 10 62 IPR001781 -
Ssu7g0527 188 SMART lim_4 110 162 IPR001781 -
Ssu7g0527 188 CDD LIM1_SF3 7 69 - -
Ssu7g0527 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Ssu7g0527 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Ssu7g0527 188 Gene3D Cysteine Rich Protein 106 175 - -
Ssu7g0527 188 Gene3D Cysteine Rich Protein 5 75 - -
Ssu7g0527 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Ssu7g0527 188 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Ssu7g0527 188 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Ssu7g0527 188 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 182 - -
Ssu7g0527 188 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Ssu7g0527 188 PANTHER OS06G0237300 PROTEIN 1 182 IPR045268 GO:0051015
Ssu7g0527 188 Pfam LIM domain 11 65 IPR001781 -
Ssu7g0527 188 Pfam LIM domain 111 166 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0527 Ssu-Chr7 9657203 9659118 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ssu7g0527 LIM 8.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0527 K09377 - gmx:100306027 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0527 7 9657203 9659118 Ssu7g0527 7 9657203 9659118 ECH