Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0518 atggatcCTGCTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGATTGTACACAGCTGAGGAAGCTGACTTCATGAGCCACTTGCTTGGTAACTGCTCACTCCCTGAGAACCTGTGTGGAAATTTCAATTTGGGAATTCCATCTGCAATATGGCCTggccatgaatccacaatagtGAGCGTGACAGGCATCAATGGAAGTCCATATTTTCCTGCAAATGCTGATAATAGTAATACTAATTATCTTCGTTTTTCACAAGGAAGTAGTTCCACTGCTGATAGTAGCAATATATTTCCTACTACAAGTGGTAATAACTGCTGTTTGAATGATCCAGTAGCCAACATTGGCTACATGTCCATGGATTTTTCCTTGGGGGATGCCAAGTTCAGCACTTATAATGTTCAAGGGAGTGACAGCCAACATATGAATGAAAACACTGATGAAGAGTTAGGTCTAGAGGTTATTGCTGACAAGAATTTGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCAGAAGAGAATATAAACACCAATCTGGAGAAGTCAGGAAAAAGATCTAGGGGCACAATGCAGGTgagaaagaacaagaaaaatgttaaatctgTGAAGAAACCAAAATCTGATTCGATAAGTAACTTTGAAGAGGGTGGAAGTGCTGGTGTTCAGGGTCAGAGCTTGAGCAGTTGCTGCTCAGAGGATGATGAGTCCAATGCTTCTCAGGAGCTAAATGGAGGAGGATCTTCAAGTTTGAGCCTGGAGGATTCTACAGCTCTCAagttaaagggaaaaaaatcaaCACCTAATAGAGGTTCTGCTACTGATCCACAGAGTGTATATGCAAGGagaagaagagaaagaataaatgaaagGTTGAGAATCCTACAAAACCTAGTCCCCAATGGAACCAAGGTAGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCCATTGCTTATAATGGAATGAACATTGGACTAAACCTCAATATTACCCTAACCAACCAACCATAA 1089 0.3829 MDPAEQISEEWSSLSGLYTAEEADFMSHLLGNCSLPENLCGNFNLGIPSAIWPGHESTIVSVTGINGSPYFPANADNSNTNYLRFSQGSSSTADSSNIFPTTSGNNCCLNDPVANIGYMSMDFSLGDAKFSTYNVQGSDSQHMNENTDEELGLEVIADKNLQDHQECEVLVSEAAEENINTNLEKSGKRSRGTMQVRKNKKNVKSVKKPKSDSISNFEEGGSAGVQGQSLSSCCSEDDESNASQELNGGGSSSLSLEDSTALKLKGKKSTPNRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLNLNITLTNQP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0518 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 357 - -
Ssu7g0518 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 341 IPR036638 GO:0046983
Ssu7g0518 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 325 IPR011598 GO:0046983
Ssu7g0518 362 MobiDBLite consensus disorder prediction 215 259 - -
Ssu7g0518 362 MobiDBLite consensus disorder prediction 180 285 - -
Ssu7g0518 362 Pfam Helix-loop-helix DNA-binding domain 285 326 IPR011598 GO:0046983
Ssu7g0518 362 PANTHER TRANSCRIPTION FACTOR BHLH54 8 357 - -
Ssu7g0518 362 Gene3D - 278 339 IPR036638 GO:0046983
Ssu7g0518 362 SMART finulus 281 331 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0518 Ssu-Chr7 9542048 9543644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0518 10 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.667 2.86e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g0518 HLH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0518 - - gmx:100817334 569.696