Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0517 atggaaccTGCTCAACTGATTTCTGAAGAATGGGGTTCTCTTTGTGGATTGCACACAACTGAAGAAGCTGACTTTATGGCTCAGTTGTTTGGTGGTAACTATTCTGTCACAGAAAAACACTCTGGAAATACCAGTTTTGGCTTTTGGCCTGGTCATGAATCCAAAATAGTGACCATGACAGGCACTAATAGCAACTCACACTTTCCTTCAAATGTTACagatactaattttttatgtttctcaCAAGGGAGTAGCTCCAGCACTGATAGTGGTAACATGCTTTCCACTACAAGTAGTGGAACCTACTCCTCTGATCCAGCAACAAACTATGATTCTGTGTCCATGGTTTTTTGCTTGGGAGATGCCAAATTTAGTCCCCATAGTTTTCAATGGAATGACAACTTGAGCCAACAGACAAATGAAAACACTGATGAAGAGTCAAGTCTAGACCTAGGGAAACTTGCTCTTGCTGACAACAATTTGCAGGCTAAGAGGGAGTATGAAATGATGGCTTCTGAACCTGTAGAAGAGGATGGAAGCATAAACCTGGAGATCCAAGCAAAAAGACTCAGGAGTTCAATAGAGGTCTCAAAAGCATTGAGGAATGCTAAATCGAGAAAAAATCCAAAATCTGCTTCAATGAGAAATTATGAAGATGATAGAAGATGGAGCCTCCAAGGGCATGGCTCCAGCAGCTGTTTCTCACAGGGTGACTCTAATGCTACTCTGGAGCCAAATGGAGAGGCATCAAAAGATCCTGCAGATCccaatttatatagaaaatcaaGAGCAACTACTGGTCCTGCCACTGATCCACAGAGCCTTTATGCAAGAaaaagaagagaaagaataaatgaaagGTTGAGAATACTGCAAAATCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTCGAGGAAGCTGTCCAATACGTGAAATTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGACTAGACCTCAGTATTTCTCCCACCAAAGGAAGATGA 1065 0.3972 MEPAQLISEEWGSLCGLHTTEEADFMAQLFGGNYSVTEKHSGNTSFGFWPGHESKIVTMTGTNSNSHFPSNVTDTNFLCFSQGSSSSTDSGNMLSTTSSGTYSSDPATNYDSVSMVFCLGDAKFSPHSFQWNDNLSQQTNENTDEESSLDLGKLALADNNLQAKREYEMMASEPVEEDGSINLEIQAKRLRSSIEVSKALRNAKSRKNPKSASMRNYEDDRRWSLQGHGSSSCFSQGDSNATLEPNGEASKDPADPNLYRKSRATTGPATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSISPTKGR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0517 354 Pfam Helix-loop-helix DNA-binding domain 278 318 IPR011598 GO:0046983
Ssu7g0517 354 MobiDBLite consensus disorder prediction 225 279 - -
Ssu7g0517 354 SMART finulus 274 323 IPR011598 GO:0046983
Ssu7g0517 354 MobiDBLite consensus disorder prediction 226 246 - -
Ssu7g0517 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 333 IPR036638 GO:0046983
Ssu7g0517 354 CDD bHLH_AtIND_like 269 331 - -
Ssu7g0517 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Ssu7g0517 354 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 7 349 - -
Ssu7g0517 354 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 349 - -
Ssu7g0517 354 Gene3D - 272 326 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0517 Ssu-Chr7 9535840 9537785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0517 10 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.398 3.42e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g0517 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0517 - - gmx:100816788 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0517 7 9535840 9537785 Ssu7g0517 7 9535840 9537785 ECH
Ssu2g3161 2 93881449 93885407 Ssu7g0517 7 9535840 9537785 PCT